Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0129

Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF2161 and cas3 are separated by 450 nucleotidescas3 and DVUA0130 are separated by 13 nucleotidesDVUA0130 and DVUA0131 overlap by 4 nucleotides DORF2161: DORF2161 - SEED: FIG00606767: hypothetical protein, at 165,323 to 167,803 DORF2161 DVUA0129: cas3 - CRISPR-associated helicase Cas3 domain protein (TIGR), at 168,254 to 170,362 cas3 DVUA0130: DVUA0130 - CRISPR-associated protein, CT1134 family (TIGR), at 170,376 to 171,059 DVUA0130 DVUA0131: DVUA0131 - CRISPR-associated protein, CT1133 family (TIGR), at 171,056 to 172,894 DVUA0131 Position (kb) 168 169 170 171Strain fitness (log2 ratio) -2 -1 0 1at 167.286 kb on + strand, within DORF2161at 167.382 kb on - strand, within DORF2161at 167.389 kb on + strand, within DORF2161at 167.426 kb on + strand, within DORF2161at 167.439 kb on - strand, within DORF2161at 167.439 kb on - strand, within DORF2161at 167.514 kb on + strand, within DORF2161at 167.519 kb on + strand, within DORF2161at 167.522 kb on - strand, within DORF2161at 167.524 kb on + strand, within DORF2161at 167.597 kb on + strandat 167.599 kb on - strandat 167.698 kb on - strandat 167.713 kb on + strandat 167.733 kb on - strandat 167.823 kb on + strandat 167.823 kb on + strandat 167.831 kb on - strandat 167.831 kb on - strandat 167.831 kb on - strandat 167.958 kb on - strandat 167.993 kb on + strandat 168.001 kb on - strandat 168.019 kb on + strandat 168.038 kb on + strandat 168.170 kb on - strandat 168.178 kb on - strandat 168.192 kb on - strandat 168.196 kb on + strandat 168.196 kb on + strandat 168.196 kb on + strandat 168.225 kb on + strandat 168.443 kb on - strandat 168.453 kb on - strandat 168.579 kb on - strand, within cas3at 168.596 kb on + strand, within cas3at 168.596 kb on + strand, within cas3at 168.665 kb on - strand, within cas3at 168.740 kb on + strand, within cas3at 168.740 kb on + strand, within cas3at 168.740 kb on + strand, within cas3at 168.748 kb on - strand, within cas3at 168.748 kb on - strand, within cas3at 168.767 kb on + strand, within cas3at 168.775 kb on - strand, within cas3at 168.789 kb on - strand, within cas3at 168.946 kb on - strand, within cas3at 168.951 kb on - strand, within cas3at 168.976 kb on + strand, within cas3at 168.989 kb on - strand, within cas3at 168.997 kb on - strand, within cas3at 169.030 kb on - strand, within cas3at 169.050 kb on + strand, within cas3at 169.135 kb on + strand, within cas3at 169.177 kb on - strand, within cas3at 169.220 kb on - strand, within cas3at 169.262 kb on - strand, within cas3at 169.272 kb on - strand, within cas3at 169.289 kb on - strand, within cas3at 169.302 kb on - strand, within cas3at 169.319 kb on + strand, within cas3at 169.340 kb on + strand, within cas3at 169.343 kb on - strand, within cas3at 169.372 kb on - strand, within cas3at 169.392 kb on + strand, within cas3at 169.392 kb on - strand, within cas3at 169.405 kb on - strand, within cas3at 169.438 kb on + strand, within cas3at 169.438 kb on + strand, within cas3at 169.446 kb on - strand, within cas3at 169.480 kb on - strand, within cas3at 169.486 kb on + strand, within cas3at 169.532 kb on - strand, within cas3at 169.661 kb on - strand, within cas3at 169.747 kb on - strand, within cas3at 169.795 kb on - strand, within cas3at 169.820 kb on - strand, within cas3at 169.854 kb on - strand, within cas3at 169.879 kb on - strand, within cas3at 169.879 kb on - strand, within cas3at 169.879 kb on - strand, within cas3at 169.937 kb on + strand, within cas3at 169.966 kb on + strand, within cas3at 169.966 kb on + strand, within cas3at 169.966 kb on + strand, within cas3at 169.974 kb on - strand, within cas3at 170.115 kb on + strand, within cas3at 170.123 kb on + strand, within cas3at 170.166 kb on + strandat 170.166 kb on + strandat 170.166 kb on + strandat 170.174 kb on - strandat 170.174 kb on - strandat 170.179 kb on - strandat 170.181 kb on + strandat 170.268 kb on + strandat 170.304 kb on + strandat 170.333 kb on - strandat 170.404 kb on + strandat 170.425 kb on - strandat 170.489 kb on - strand, within DVUA0130at 170.509 kb on + strand, within DVUA0130at 170.510 kb on + strand, within DVUA0130at 170.517 kb on - strand, within DVUA0130at 170.560 kb on + strand, within DVUA0130at 170.565 kb on - strand, within DVUA0130at 170.702 kb on - strand, within DVUA0130at 170.763 kb on + strand, within DVUA0130at 170.796 kb on + strand, within DVUA0130at 170.959 kb on - strand, within DVUA0130at 171.135 kb on + strandat 171.153 kb on - strandat 171.355 kb on + strand, within DVUA0131

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
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167,286 + DORF2161 0.79 -1.0
167,382 - DORF2161 0.83 -0.4
167,389 + DORF2161 0.83 +0.2
167,426 + DORF2161 0.85 -0.1
167,439 - DORF2161 0.85 -0.5
167,439 - DORF2161 0.85 -1.7
167,514 + DORF2161 0.88 -0.0
167,519 + DORF2161 0.89 -0.6
167,522 - DORF2161 0.89 -0.1
167,524 + DORF2161 0.89 -0.3
167,597 + -0.6
167,599 - -0.7
167,698 - +1.1
167,713 + -1.1
167,733 - -0.8
167,823 + -0.1
167,823 + -1.8
167,831 - +0.0
167,831 - +0.5
167,831 - -0.1
167,958 - -0.2
167,993 + +0.5
168,001 - +0.2
168,019 + +0.5
168,038 + -0.6
168,170 - -0.3
168,178 - +0.2
168,192 - -0.3
168,196 + -0.3
168,196 + -0.0
168,196 + +0.5
168,225 + -0.3
168,443 - -1.7
168,453 - -0.6
168,579 - cas3 DVUA0129 0.15 +0.1
168,596 + cas3 DVUA0129 0.16 -0.0
168,596 + cas3 DVUA0129 0.16 -0.4
168,665 - cas3 DVUA0129 0.19 -0.7
168,740 + cas3 DVUA0129 0.23 -0.5
168,740 + cas3 DVUA0129 0.23 -0.0
168,740 + cas3 DVUA0129 0.23 -0.4
168,748 - cas3 DVUA0129 0.23 -0.3
168,748 - cas3 DVUA0129 0.23 -0.8
168,767 + cas3 DVUA0129 0.24 -1.5
168,775 - cas3 DVUA0129 0.25 -0.3
168,789 - cas3 DVUA0129 0.25 -0.2
168,946 - cas3 DVUA0129 0.33 -0.4
168,951 - cas3 DVUA0129 0.33 -1.3
168,976 + cas3 DVUA0129 0.34 -0.2
168,989 - cas3 DVUA0129 0.35 -0.3
168,997 - cas3 DVUA0129 0.35 -0.9
169,030 - cas3 DVUA0129 0.37 -1.3
169,050 + cas3 DVUA0129 0.38 -0.1
169,135 + cas3 DVUA0129 0.42 +0.2
169,177 - cas3 DVUA0129 0.44 -0.3
169,220 - cas3 DVUA0129 0.46 +0.1
169,262 - cas3 DVUA0129 0.48 -0.1
169,272 - cas3 DVUA0129 0.48 +0.1
169,289 - cas3 DVUA0129 0.49 -0.2
169,302 - cas3 DVUA0129 0.50 -1.8
169,319 + cas3 DVUA0129 0.50 -0.6
169,340 + cas3 DVUA0129 0.51 -2.3
169,343 - cas3 DVUA0129 0.52 -0.3
169,372 - cas3 DVUA0129 0.53 -0.2
169,392 + cas3 DVUA0129 0.54 -0.2
169,392 - cas3 DVUA0129 0.54 +0.5
169,405 - cas3 DVUA0129 0.55 -0.5
169,438 + cas3 DVUA0129 0.56 -0.4
169,438 + cas3 DVUA0129 0.56 -1.0
169,446 - cas3 DVUA0129 0.57 +0.4
169,480 - cas3 DVUA0129 0.58 +0.3
169,486 + cas3 DVUA0129 0.58 -0.8
169,532 - cas3 DVUA0129 0.61 -0.9
169,661 - cas3 DVUA0129 0.67 -0.4
169,747 - cas3 DVUA0129 0.71 -0.3
169,795 - cas3 DVUA0129 0.73 -0.3
169,820 - cas3 DVUA0129 0.74 -0.3
169,854 - cas3 DVUA0129 0.76 -0.4
169,879 - cas3 DVUA0129 0.77 -0.0
169,879 - cas3 DVUA0129 0.77 -0.7
169,879 - cas3 DVUA0129 0.77 +0.0
169,937 + cas3 DVUA0129 0.80 +0.4
169,966 + cas3 DVUA0129 0.81 -1.7
169,966 + cas3 DVUA0129 0.81 -0.3
169,966 + cas3 DVUA0129 0.81 -0.4
169,974 - cas3 DVUA0129 0.82 -0.7
170,115 + cas3 DVUA0129 0.88 -0.0
170,123 + cas3 DVUA0129 0.89 -0.8
170,166 + -0.1
170,166 + -0.7
170,166 + -0.4
170,174 - -0.1
170,174 - -0.6
170,179 - +1.2
170,181 + -0.1
170,268 + -0.0
170,304 + -0.4
170,333 - -0.7
170,404 + -0.2
170,425 - -0.3
170,489 - DVUA0130 0.17 -0.0
170,509 + DVUA0130 0.19 -0.1
170,510 + DVUA0130 0.20 -0.1
170,517 - DVUA0130 0.21 +0.1
170,560 + DVUA0130 0.27 +0.9
170,565 - DVUA0130 0.28 -0.5
170,702 - DVUA0130 0.48 +0.4
170,763 + DVUA0130 0.57 -1.1
170,796 + DVUA0130 0.61 +0.0
170,959 - DVUA0130 0.85 +0.5
171,135 + +0.5
171,153 - -0.8
171,355 + DVUA0131 0.16 -0.9

Or see this region's nucleotide sequence