Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt msrB and DVU0577 are separated by 366 nucleotides DVU0577 and DVU0578 are separated by 1 nucleotides DVU0578 and DVU0579 overlap by 4 nucleotides
DVU0576: msrB - peptide methionine sulfoxide reductase MsrB (TIGR), at 640,793 to 641,224
msrB
DVU0577: DVU0577 - formate dehydrogenase formation protein FdhE, putative (TIGR), at 641,591 to 642,472
DVU0577
DVU0578: DVU0578 - formate dehydrogenase accessory protein FdhD, putative (TIGR), at 642,474 to 643,262
DVU0578
DVU0579: DVU0579 - molybdopterin-guanine dinucleotide biosynthesis protein A, putative (TIGR), at 643,259 to 643,927
DVU0579
Position (kb) 641
642
643 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 640.641 kb on - strand at 640.642 kb on - strand at 640.690 kb on + strand at 640.748 kb on - strand at 640.784 kb on - strand at 640.817 kb on + strand at 640.897 kb on + strand, within msrB at 640.897 kb on + strand, within msrB at 640.905 kb on - strand, within msrB at 640.905 kb on - strand, within msrB at 641.021 kb on + strand, within msrB at 641.029 kb on - strand, within msrB at 641.030 kb on + strand, within msrB at 641.146 kb on + strand, within msrB at 641.162 kb on - strand, within msrB at 641.162 kb on - strand, within msrB at 641.162 kb on - strand, within msrB at 641.274 kb on + strand at 641.286 kb on + strand at 641.326 kb on + strand at 641.326 kb on + strand at 641.334 kb on - strand at 641.334 kb on - strand at 641.345 kb on - strand at 641.413 kb on - strand at 641.622 kb on + strand at 641.643 kb on - strand at 641.643 kb on - strand at 641.643 kb on - strand at 641.664 kb on - strand at 641.741 kb on - strand, within DVU0577 at 641.741 kb on - strand, within DVU0577 at 641.782 kb on - strand, within DVU0577 at 641.782 kb on - strand, within DVU0577 at 641.812 kb on - strand, within DVU0577 at 641.821 kb on + strand, within DVU0577 at 641.829 kb on - strand, within DVU0577 at 641.907 kb on + strand, within DVU0577 at 641.962 kb on + strand, within DVU0577 at 641.988 kb on - strand, within DVU0577 at 642.013 kb on + strand, within DVU0577 at 642.021 kb on - strand, within DVU0577 at 642.149 kb on + strand, within DVU0577 at 642.167 kb on + strand, within DVU0577 at 642.177 kb on + strand, within DVU0577 at 642.184 kb on + strand, within DVU0577 at 642.184 kb on + strand, within DVU0577 at 642.184 kb on + strand, within DVU0577 at 642.189 kb on + strand, within DVU0577 at 642.190 kb on - strand, within DVU0577 at 642.214 kb on + strand, within DVU0577 at 642.359 kb on + strand, within DVU0577 at 642.359 kb on + strand, within DVU0577 at 642.378 kb on + strand, within DVU0577 at 642.391 kb on - strand at 642.464 kb on + strand at 642.466 kb on - strand at 642.473 kb on + strand at 642.499 kb on + strand at 642.532 kb on + strand at 642.572 kb on - strand, within DVU0578 at 642.609 kb on - strand, within DVU0578 at 642.620 kb on + strand, within DVU0578 at 642.643 kb on + strand, within DVU0578 at 642.748 kb on + strand, within DVU0578 at 642.789 kb on + strand, within DVU0578 at 642.814 kb on - strand, within DVU0578 at 642.833 kb on + strand, within DVU0578 at 642.839 kb on + strand, within DVU0578 at 642.847 kb on - strand, within DVU0578 at 642.848 kb on - strand, within DVU0578 at 642.874 kb on - strand, within DVU0578 at 642.884 kb on + strand, within DVU0578 at 642.931 kb on + strand, within DVU0578 at 642.931 kb on + strand, within DVU0578 at 642.931 kb on + strand, within DVU0578 at 642.931 kb on + strand, within DVU0578 at 642.963 kb on + strand, within DVU0578 at 642.963 kb on + strand, within DVU0578 at 643.076 kb on + strand, within DVU0578 at 643.180 kb on + strand, within DVU0578 at 643.188 kb on + strand at 643.198 kb on - strand at 643.323 kb on + strand at 643.362 kb on - strand, within DVU0579 at 643.419 kb on + strand, within DVU0579 at 643.427 kb on - strand, within DVU0579 at 643.435 kb on - strand, within DVU0579
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract remove 640,641 - -0.3 640,642 - -0.4 640,690 + +1.6 640,748 - -0.2 640,784 - +0.3 640,817 + +0.6 640,897 + msrB DVU0576 0.24 +0.1 640,897 + msrB DVU0576 0.24 -1.0 640,905 - msrB DVU0576 0.26 -1.3 640,905 - msrB DVU0576 0.26 +0.0 641,021 + msrB DVU0576 0.53 +0.6 641,029 - msrB DVU0576 0.55 +0.1 641,030 + msrB DVU0576 0.55 +0.7 641,146 + msrB DVU0576 0.82 -0.2 641,162 - msrB DVU0576 0.85 -0.2 641,162 - msrB DVU0576 0.85 +0.7 641,162 - msrB DVU0576 0.85 +0.5 641,274 + -1.0 641,286 + -0.1 641,326 + +0.4 641,326 + +0.2 641,334 - -0.5 641,334 - +1.6 641,345 - +0.8 641,413 - +0.0 641,622 + -0.9 641,643 - -1.0 641,643 - +0.2 641,643 - -1.5 641,664 - -0.4 641,741 - DVU0577 0.17 -0.4 641,741 - DVU0577 0.17 -1.6 641,782 - DVU0577 0.22 -1.8 641,782 - DVU0577 0.22 -1.8 641,812 - DVU0577 0.25 -1.3 641,821 + DVU0577 0.26 -2.0 641,829 - DVU0577 0.27 -2.1 641,907 + DVU0577 0.36 -1.3 641,962 + DVU0577 0.42 -0.9 641,988 - DVU0577 0.45 -0.4 642,013 + DVU0577 0.48 -1.5 642,021 - DVU0577 0.49 +0.1 642,149 + DVU0577 0.63 -1.6 642,167 + DVU0577 0.65 -1.0 642,177 + DVU0577 0.66 -0.8 642,184 + DVU0577 0.67 -1.5 642,184 + DVU0577 0.67 +0.6 642,184 + DVU0577 0.67 -1.6 642,189 + DVU0577 0.68 -1.6 642,190 - DVU0577 0.68 -1.0 642,214 + DVU0577 0.71 -2.9 642,359 + DVU0577 0.87 -2.2 642,359 + DVU0577 0.87 -0.8 642,378 + DVU0577 0.89 -1.0 642,391 - -0.4 642,464 + -0.3 642,466 - -1.0 642,473 + -0.8 642,499 + -3.5 642,532 + -1.0 642,572 - DVU0578 0.12 -2.7 642,609 - DVU0578 0.17 -1.2 642,620 + DVU0578 0.19 -0.8 642,643 + DVU0578 0.21 -0.4 642,748 + DVU0578 0.35 -1.2 642,789 + DVU0578 0.40 -1.6 642,814 - DVU0578 0.43 +0.6 642,833 + DVU0578 0.46 +0.6 642,839 + DVU0578 0.46 +1.6 642,847 - DVU0578 0.47 -1.3 642,848 - DVU0578 0.47 -0.6 642,874 - DVU0578 0.51 -0.4 642,884 + DVU0578 0.52 -0.8 642,931 + DVU0578 0.58 -0.6 642,931 + DVU0578 0.58 +0.6 642,931 + DVU0578 0.58 -2.2 642,931 + DVU0578 0.58 -1.0 642,963 + DVU0578 0.62 -0.3 642,963 + DVU0578 0.62 -0.9 643,076 + DVU0578 0.76 -1.2 643,180 + DVU0578 0.89 -0.4 643,188 + +0.4 643,198 - -1.1 643,323 + -3.3 643,362 - DVU0579 0.15 -0.4 643,419 + DVU0579 0.24 -2.9 643,427 - DVU0579 0.25 -0.8 643,435 - DVU0579 0.26 -0.1
Or see this region's nucleotide sequence