Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0175

Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphsA and DVU0174 are separated by 82 nucleotidesDVU0174 and DVU0175 are separated by 476 nucleotidesDVU0175 and DVU0176 are separated by 255 nucleotides DVU0173: phsA - thiosulfate reductase (Shelley Haveman), at 216,495 to 218,591 phsA DVU0174: DVU0174 - hypothetical protein (TIGR), at 218,674 to 218,781 DVU0174 DVU0175: DVU0175 - tungsten formylmethanofuran dehydrogenase family protein/molybdopterin binding protein (TIGR), at 219,258 to 220,889 DVU0175 DVU0176: DVU0176 - glycerophosphoryl diester phosphodiesterase family protein (TIGR), at 221,145 to 222,044 DVU0176 Position (kb) 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 218.262 kb on + strand, within phsAat 218.389 kb on + strandat 218.468 kb on - strandat 218.477 kb on - strandat 218.485 kb on + strandat 218.493 kb on - strandat 218.524 kb on - strandat 218.531 kb on + strandat 218.539 kb on - strandat 218.539 kb on - strandat 218.607 kb on + strandat 218.609 kb on + strandat 218.617 kb on - strandat 218.639 kb on + strandat 218.648 kb on + strandat 218.681 kb on - strandat 218.683 kb on + strandat 218.688 kb on + strand, within DVU0174at 218.693 kb on + strand, within DVU0174at 218.696 kb on - strand, within DVU0174at 218.698 kb on + strand, within DVU0174at 218.698 kb on + strand, within DVU0174at 218.713 kb on - strand, within DVU0174at 218.933 kb on + strandat 218.948 kb on + strandat 218.953 kb on + strandat 218.953 kb on + strandat 218.961 kb on - strandat 218.997 kb on + strandat 219.000 kb on - strandat 219.035 kb on - strandat 219.037 kb on - strandat 219.038 kb on + strandat 219.130 kb on + strandat 219.264 kb on - strandat 219.264 kb on - strandat 219.264 kb on - strandat 219.264 kb on - strandat 219.279 kb on + strandat 219.330 kb on - strandat 219.338 kb on + strandat 219.386 kb on + strandat 219.387 kb on + strandat 219.395 kb on - strandat 219.430 kb on + strand, within DVU0175at 219.430 kb on + strand, within DVU0175at 219.438 kb on - strand, within DVU0175at 219.472 kb on + strand, within DVU0175at 219.472 kb on + strand, within DVU0175at 219.512 kb on + strand, within DVU0175at 219.582 kb on - strand, within DVU0175at 219.651 kb on - strand, within DVU0175at 219.688 kb on - strand, within DVU0175at 219.727 kb on + strand, within DVU0175at 219.787 kb on + strand, within DVU0175at 219.790 kb on - strand, within DVU0175at 219.805 kb on + strand, within DVU0175at 219.805 kb on + strand, within DVU0175at 219.805 kb on + strand, within DVU0175at 219.813 kb on - strand, within DVU0175at 219.841 kb on - strand, within DVU0175at 219.852 kb on - strand, within DVU0175at 219.948 kb on - strand, within DVU0175at 219.948 kb on - strand, within DVU0175at 219.948 kb on - strand, within DVU0175at 219.950 kb on + strand, within DVU0175at 219.950 kb on + strand, within DVU0175at 219.958 kb on - strand, within DVU0175at 219.958 kb on - strand, within DVU0175at 219.984 kb on + strand, within DVU0175at 220.050 kb on + strand, within DVU0175at 220.058 kb on - strand, within DVU0175at 220.058 kb on - strand, within DVU0175at 220.098 kb on + strand, within DVU0175at 220.099 kb on - strand, within DVU0175at 220.127 kb on + strand, within DVU0175at 220.127 kb on + strand, within DVU0175at 220.133 kb on - strand, within DVU0175at 220.133 kb on - strand, within DVU0175at 220.190 kb on - strand, within DVU0175at 220.208 kb on - strand, within DVU0175at 220.215 kb on - strand, within DVU0175at 220.296 kb on - strand, within DVU0175at 220.313 kb on + strand, within DVU0175at 220.460 kb on - strand, within DVU0175at 220.479 kb on + strand, within DVU0175at 220.545 kb on - strand, within DVU0175at 220.545 kb on - strand, within DVU0175at 220.599 kb on + strand, within DVU0175at 220.637 kb on + strand, within DVU0175at 220.637 kb on + strand, within DVU0175at 220.725 kb on + strand, within DVU0175at 220.793 kb on + strandat 220.798 kb on - strandat 220.902 kb on - strandat 221.015 kb on - strandat 221.065 kb on + strandat 221.239 kb on + strand, within DVU0176at 221.356 kb on + strand, within DVU0176at 221.397 kb on - strand, within DVU0176at 221.492 kb on + strand, within DVU0176at 221.497 kb on + strand, within DVU0176at 221.502 kb on + strand, within DVU0176at 221.510 kb on - strand, within DVU0176at 221.553 kb on + strand, within DVU0176at 221.629 kb on + strand, within DVU0176at 221.660 kb on - strand, within DVU0176at 221.662 kb on + strand, within DVU0176at 221.670 kb on - strand, within DVU0176at 221.779 kb on - strand, within DVU0176at 221.816 kb on + strand, within DVU0176

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
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218,262 + phsA DVU0173 0.84 -0.7
218,389 + -0.4
218,468 - -0.7
218,477 - -0.5
218,485 + -1.6
218,493 - -0.7
218,524 - -0.1
218,531 + -1.0
218,539 - -1.5
218,539 - -0.6
218,607 + +0.4
218,609 + -0.1
218,617 - -1.7
218,639 + -0.6
218,648 + -0.7
218,681 - -0.2
218,683 + -1.2
218,688 + DVU0174 0.13 +1.4
218,693 + DVU0174 0.18 +2.4
218,696 - DVU0174 0.20 -0.1
218,698 + DVU0174 0.22 +0.4
218,698 + DVU0174 0.22 +1.1
218,713 - DVU0174 0.36 -1.0
218,933 + -1.4
218,948 + -0.3
218,953 + -0.2
218,953 + +0.1
218,961 - +0.1
218,997 + +0.3
219,000 - +0.2
219,035 - +0.4
219,037 - -0.7
219,038 + -0.1
219,130 + -0.4
219,264 - -0.8
219,264 - -0.4
219,264 - -0.5
219,264 - +0.4
219,279 + -1.9
219,330 - -1.1
219,338 + -0.6
219,386 + -0.6
219,387 + -0.8
219,395 - -1.2
219,430 + DVU0175 0.11 -0.6
219,430 + DVU0175 0.11 -0.2
219,438 - DVU0175 0.11 -1.6
219,472 + DVU0175 0.13 -0.1
219,472 + DVU0175 0.13 -0.5
219,512 + DVU0175 0.16 +0.2
219,582 - DVU0175 0.20 -1.2
219,651 - DVU0175 0.24 -0.6
219,688 - DVU0175 0.26 -0.9
219,727 + DVU0175 0.29 -1.3
219,787 + DVU0175 0.32 +0.4
219,790 - DVU0175 0.33 -0.6
219,805 + DVU0175 0.34 -0.5
219,805 + DVU0175 0.34 -0.2
219,805 + DVU0175 0.34 -2.2
219,813 - DVU0175 0.34 -0.8
219,841 - DVU0175 0.36 +1.4
219,852 - DVU0175 0.36 -0.9
219,948 - DVU0175 0.42 -1.2
219,948 - DVU0175 0.42 -0.2
219,948 - DVU0175 0.42 -1.0
219,950 + DVU0175 0.42 -0.5
219,950 + DVU0175 0.42 -0.5
219,958 - DVU0175 0.43 -1.9
219,958 - DVU0175 0.43 -1.6
219,984 + DVU0175 0.44 -1.2
220,050 + DVU0175 0.49 -1.5
220,058 - DVU0175 0.49 -0.6
220,058 - DVU0175 0.49 -0.6
220,098 + DVU0175 0.51 -0.9
220,099 - DVU0175 0.52 -1.0
220,127 + DVU0175 0.53 -0.6
220,127 + DVU0175 0.53 -0.6
220,133 - DVU0175 0.54 -0.6
220,133 - DVU0175 0.54 -0.9
220,190 - DVU0175 0.57 -1.8
220,208 - DVU0175 0.58 -0.8
220,215 - DVU0175 0.59 -0.2
220,296 - DVU0175 0.64 -1.9
220,313 + DVU0175 0.65 -0.1
220,460 - DVU0175 0.74 +1.0
220,479 + DVU0175 0.75 -0.6
220,545 - DVU0175 0.79 -0.4
220,545 - DVU0175 0.79 -1.2
220,599 + DVU0175 0.82 -0.6
220,637 + DVU0175 0.84 +0.4
220,637 + DVU0175 0.84 -0.9
220,725 + DVU0175 0.90 -0.1
220,793 + -2.2
220,798 - -1.0
220,902 - -0.6
221,015 - +0.3
221,065 + -3.2
221,239 + DVU0176 0.10 -0.3
221,356 + DVU0176 0.23 -0.6
221,397 - DVU0176 0.28 -0.0
221,492 + DVU0176 0.39 -0.3
221,497 + DVU0176 0.39 -1.9
221,502 + DVU0176 0.40 -0.6
221,510 - DVU0176 0.41 -0.0
221,553 + DVU0176 0.45 -1.6
221,629 + DVU0176 0.54 +0.4
221,660 - DVU0176 0.57 -0.6
221,662 + DVU0176 0.57 -0.2
221,670 - DVU0176 0.58 -1.0
221,779 - DVU0176 0.70 +0.7
221,816 + DVU0176 0.75 +0.3

Or see this region's nucleotide sequence