Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfaE and DVU0145 are separated by 385 nucleotides DVU0145 and DVU0146 are separated by 143 nucleotides DVU0146 and DVU0147 overlap by 4 nucleotides
DVU0144: rfaE - cytidyltransferase-related domain protein (TIGR), at 179,041 to 179,643
rfaE
DVU0145: DVU0145 - response regulator (TIGR), at 180,029 to 180,436
DVU0145
DVU0146: DVU0146 - hypothetical protein (TIGR), at 180,580 to 181,389
DVU0146
DVU0147: DVU0147 - lipoprotein, putative (TIGR), at 181,386 to 181,646
DVU0147
Position (kb) 180
181 Strain fitness (log2 ratio) -2
-1
0
1 at 179.039 kb on - strand at 179.039 kb on - strand at 179.637 kb on + strand at 179.645 kb on - strand at 179.645 kb on - strand at 179.665 kb on + strand at 179.783 kb on - strand at 179.793 kb on - strand at 179.802 kb on + strand at 179.842 kb on - strand at 179.892 kb on - strand at 179.983 kb on + strand at 179.983 kb on + strand at 180.001 kb on + strand at 180.081 kb on + strand, within DVU0145 at 180.102 kb on + strand, within DVU0145 at 180.167 kb on + strand, within DVU0145 at 180.182 kb on + strand, within DVU0145 at 180.190 kb on - strand, within DVU0145 at 180.237 kb on - strand, within DVU0145 at 180.247 kb on - strand, within DVU0145 at 180.261 kb on - strand, within DVU0145 at 180.326 kb on - strand, within DVU0145 at 180.361 kb on + strand, within DVU0145 at 180.411 kb on - strand at 180.415 kb on + strand at 180.622 kb on + strand at 180.739 kb on - strand, within DVU0146 at 180.779 kb on - strand, within DVU0146 at 180.791 kb on + strand, within DVU0146 at 180.833 kb on + strand, within DVU0146 at 180.839 kb on - strand, within DVU0146 at 180.862 kb on + strand, within DVU0146 at 180.985 kb on + strand, within DVU0146 at 181.127 kb on - strand, within DVU0146 at 181.188 kb on + strand, within DVU0146 at 181.202 kb on + strand, within DVU0146 at 181.202 kb on + strand, within DVU0146 at 181.220 kb on - strand, within DVU0146 at 181.260 kb on + strand, within DVU0146 at 181.312 kb on + strand at 181.378 kb on + strand at 181.386 kb on - strand at 181.387 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract remove 179,039 - -0.6 179,039 - -0.3 179,637 + +0.4 179,645 - +0.9 179,645 - -0.0 179,665 + -0.6 179,783 - -0.2 179,793 - +0.0 179,802 + -1.0 179,842 - -1.6 179,892 - -0.5 179,983 + -1.6 179,983 + -0.3 180,001 + +0.1 180,081 + DVU0145 0.13 -0.8 180,102 + DVU0145 0.18 -0.6 180,167 + DVU0145 0.34 -1.0 180,182 + DVU0145 0.38 -1.9 180,190 - DVU0145 0.39 -0.7 180,237 - DVU0145 0.51 -0.6 180,247 - DVU0145 0.53 +0.4 180,261 - DVU0145 0.57 -1.6 180,326 - DVU0145 0.73 -0.4 180,361 + DVU0145 0.81 -1.2 180,411 - -0.1 180,415 + +0.5 180,622 + -0.0 180,739 - DVU0146 0.20 -0.1 180,779 - DVU0146 0.25 +0.5 180,791 + DVU0146 0.26 +0.0 180,833 + DVU0146 0.31 +0.4 180,839 - DVU0146 0.32 -0.6 180,862 + DVU0146 0.35 -0.2 180,985 + DVU0146 0.50 -0.3 181,127 - DVU0146 0.68 +0.1 181,188 + DVU0146 0.75 -0.2 181,202 + DVU0146 0.77 -0.6 181,202 + DVU0146 0.77 -0.5 181,220 - DVU0146 0.79 -0.9 181,260 + DVU0146 0.84 -0.2 181,312 + -1.2 181,378 + +0.5 181,386 - -0.1 181,387 + -0.1
Or see this region's nucleotide sequence