Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2226

Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2225 and accC are separated by 73 nucleotidesaccC and DVU2227 overlap by 20 nucleotidesDVU2227 and DVU2228 are separated by 4 nucleotides DVU2225: DVU2225 - acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit (TIGR), at 2,316,568 to 2,318,823 DVU2225 DVU2226: accC - acetyl-CoA carboxylase, biotin carboxylase, putative (TIGR), at 2,318,897 to 2,320,312 accC DVU2227: DVU2227 - hypothetical protein (TIGR), at 2,320,293 to 2,320,736 DVU2227 DVU2228: DVU2228 - motB protein, putative (TIGR), at 2,320,741 to 2,321,475 DVU2228 Position (kb) 2318 2319 2320 2321Strain fitness (log2 ratio) -2 -1 0 1at 2320.431 kb on + strand, within DVU2227at 2320.439 kb on - strand, within DVU2227at 2320.534 kb on + strand, within DVU2227at 2320.537 kb on - strand, within DVU2227at 2320.570 kb on + strand, within DVU2227at 2320.588 kb on - strand, within DVU2227at 2320.663 kb on + strand, within DVU2227at 2320.663 kb on + strand, within DVU2227at 2320.673 kb on + strand, within DVU2227at 2320.673 kb on + strand, within DVU2227at 2320.673 kb on + strand, within DVU2227at 2320.673 kb on + strand, within DVU2227at 2320.689 kb on - strand, within DVU2227at 2320.769 kb on + strandat 2320.769 kb on + strandat 2320.800 kb on + strandat 2320.939 kb on - strand, within DVU2228at 2320.954 kb on + strand, within DVU2228at 2321.044 kb on - strand, within DVU2228at 2321.058 kb on + strand, within DVU2228at 2321.093 kb on - strand, within DVU2228at 2321.120 kb on - strand, within DVU2228at 2321.152 kb on + strand, within DVU2228at 2321.228 kb on + strand, within DVU2228at 2321.236 kb on - strand, within DVU2228at 2321.236 kb on - strand, within DVU2228

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
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2,320,431 + DVU2227 0.31 +0.1
2,320,439 - DVU2227 0.33 +0.0
2,320,534 + DVU2227 0.54 -0.5
2,320,537 - DVU2227 0.55 +0.0
2,320,570 + DVU2227 0.62 -2.3
2,320,588 - DVU2227 0.66 -2.1
2,320,663 + DVU2227 0.83 +0.2
2,320,663 + DVU2227 0.83 +0.2
2,320,673 + DVU2227 0.86 +0.2
2,320,673 + DVU2227 0.86 +0.3
2,320,673 + DVU2227 0.86 +0.2
2,320,673 + DVU2227 0.86 +0.3
2,320,689 - DVU2227 0.89 +0.3
2,320,769 + -0.5
2,320,769 + -0.6
2,320,800 + -2.2
2,320,939 - DVU2228 0.27 -0.9
2,320,954 + DVU2228 0.29 -0.7
2,321,044 - DVU2228 0.41 -1.3
2,321,058 + DVU2228 0.43 +0.2
2,321,093 - DVU2228 0.48 -0.6
2,321,120 - DVU2228 0.52 +0.0
2,321,152 + DVU2228 0.56 -0.5
2,321,228 + DVU2228 0.66 +0.7
2,321,236 - DVU2228 0.67 -0.7
2,321,236 - DVU2228 0.67 -1.4

Or see this region's nucleotide sequence