Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0972

Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0970 and DVU0971 overlap by 1 nucleotidesDVU0971 and DVU0972 are separated by 38 nucleotidesDVU0972 and DVU0973 overlap by 4 nucleotidesDVU0973 and DVU0974 are separated by 98 nucleotides DVU0970: DVU0970 - lipoprotein, putative (TIGR), at 1,067,013 to 1,067,552 DVU0970 DVU0971: DVU0971 - molybdenum cofactor biosynthesis protein (TIGR), at 1,067,552 to 1,068,331 DVU0971 DVU0972: DVU0972 - HD domain protein (TIGR), at 1,068,370 to 1,069,635 DVU0972 DVU0973: DVU0973 - 4-hydroxybenzoate octaprenyltransferase, putative (TIGR), at 1,069,632 to 1,070,501 DVU0973 DVU0974: DVU0974 - hypothetical protein (TIGR), at 1,070,600 to 1,070,938 DVU0974 Position (kb) 1068 1069 1070Strain fitness (log2 ratio) -3 -2 -1 0 1at 1067.474 kb on + strand, within DVU0970at 1067.482 kb on - strand, within DVU0970at 1067.496 kb on + strand, within DVU0970at 1067.504 kb on - strandat 1067.597 kb on + strandat 1067.760 kb on + strand, within DVU0971at 1067.828 kb on - strand, within DVU0971at 1067.829 kb on + strand, within DVU0971at 1067.908 kb on + strand, within DVU0971at 1067.931 kb on + strand, within DVU0971at 1067.966 kb on - strand, within DVU0971at 1067.981 kb on + strand, within DVU0971at 1067.981 kb on + strand, within DVU0971at 1068.005 kb on + strand, within DVU0971at 1068.065 kb on - strand, within DVU0971at 1068.149 kb on - strand, within DVU0971at 1068.240 kb on - strand, within DVU0971at 1068.240 kb on - strand, within DVU0971at 1068.277 kb on + strandat 1068.285 kb on - strandat 1068.287 kb on - strandat 1068.295 kb on + strandat 1068.335 kb on - strandat 1068.389 kb on - strandat 1068.495 kb on + strandat 1068.603 kb on + strand, within DVU0972at 1068.621 kb on - strand, within DVU0972at 1068.687 kb on + strand, within DVU0972at 1068.695 kb on - strand, within DVU0972at 1068.767 kb on + strand, within DVU0972at 1068.767 kb on + strand, within DVU0972at 1068.783 kb on - strand, within DVU0972at 1068.858 kb on - strand, within DVU0972at 1068.860 kb on + strand, within DVU0972at 1068.948 kb on - strand, within DVU0972at 1068.948 kb on - strand, within DVU0972at 1069.105 kb on + strand, within DVU0972at 1069.214 kb on + strand, within DVU0972at 1069.372 kb on - strand, within DVU0972at 1069.374 kb on - strand, within DVU0972at 1069.605 kb on - strandat 1069.620 kb on + strandat 1070.405 kb on + strand, within DVU0973at 1070.552 kb on + strandat 1070.607 kb on + strandat 1070.615 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
remove
1,067,474 + DVU0970 0.85 +0.1
1,067,482 - DVU0970 0.87 -0.3
1,067,496 + DVU0970 0.89 +0.1
1,067,504 - -0.3
1,067,597 + +0.7
1,067,760 + DVU0971 0.27 -1.3
1,067,828 - DVU0971 0.35 -1.3
1,067,829 + DVU0971 0.36 -1.2
1,067,908 + DVU0971 0.46 -1.4
1,067,931 + DVU0971 0.49 -0.3
1,067,966 - DVU0971 0.53 -1.5
1,067,981 + DVU0971 0.55 -1.7
1,067,981 + DVU0971 0.55 -0.9
1,068,005 + DVU0971 0.58 -2.6
1,068,065 - DVU0971 0.66 -1.6
1,068,149 - DVU0971 0.77 -0.3
1,068,240 - DVU0971 0.88 +0.7
1,068,240 - DVU0971 0.88 -1.6
1,068,277 + +0.1
1,068,285 - -1.1
1,068,287 - -0.3
1,068,295 + -3.3
1,068,335 - -0.1
1,068,389 - -1.6
1,068,495 + +0.1
1,068,603 + DVU0972 0.18 +1.7
1,068,621 - DVU0972 0.20 -0.3
1,068,687 + DVU0972 0.25 -1.3
1,068,695 - DVU0972 0.26 +0.6
1,068,767 + DVU0972 0.31 -1.6
1,068,767 + DVU0972 0.31 +0.0
1,068,783 - DVU0972 0.33 -0.0
1,068,858 - DVU0972 0.39 +0.3
1,068,860 + DVU0972 0.39 -1.0
1,068,948 - DVU0972 0.46 -0.0
1,068,948 - DVU0972 0.46 +0.7
1,069,105 + DVU0972 0.58 +0.3
1,069,214 + DVU0972 0.67 +0.4
1,069,372 - DVU0972 0.79 -0.2
1,069,374 - DVU0972 0.79 -0.1
1,069,605 - +0.3
1,069,620 + -0.5
1,070,405 + DVU0973 0.89 -2.7
1,070,552 + +0.2
1,070,607 + +0.5
1,070,615 - -0.1

Or see this region's nucleotide sequence