Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06085

Experiment: 3-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06084 and H281DRAFT_06085 are separated by 446 nucleotidesH281DRAFT_06085 and H281DRAFT_06086 are separated by 115 nucleotides H281DRAFT_06084: H281DRAFT_06084 - Uncharacterized membrane protein HdeD, DUF308 family, at 102,265 to 102,840 _06084 H281DRAFT_06085: H281DRAFT_06085 - transcriptional regulator, AraC family, at 103,287 to 104,114 _06085 H281DRAFT_06086: H281DRAFT_06086 - Osmotically-inducible protein OsmY, contains BON domain, at 104,230 to 104,883 _06086 Position (kb) 103 104 105Strain fitness (log2 ratio) -1 0 1at 102.521 kb on - strand, within H281DRAFT_06084at 102.570 kb on + strand, within H281DRAFT_06084at 102.570 kb on + strand, within H281DRAFT_06084at 102.571 kb on - strand, within H281DRAFT_06084at 102.574 kb on - strand, within H281DRAFT_06084at 102.737 kb on - strand, within H281DRAFT_06084at 102.830 kb on - strandat 103.045 kb on - strandat 103.249 kb on + strandat 103.249 kb on + strandat 103.250 kb on - strandat 103.300 kb on + strandat 103.301 kb on - strandat 103.554 kb on - strand, within H281DRAFT_06085at 103.778 kb on + strand, within H281DRAFT_06085at 103.779 kb on - strand, within H281DRAFT_06085at 103.933 kb on - strand, within H281DRAFT_06085at 104.048 kb on - strandat 104.055 kb on - strandat 104.058 kb on + strandat 104.058 kb on + strandat 104.058 kb on + strandat 104.058 kb on + strandat 104.059 kb on - strandat 104.059 kb on - strandat 104.059 kb on - strandat 104.059 kb on - strandat 104.060 kb on + strandat 104.153 kb on - strandat 104.194 kb on - strandat 104.214 kb on - strandat 104.287 kb on + strandat 104.288 kb on - strandat 104.503 kb on - strand, within H281DRAFT_06086

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-hydroxybutyric (C)
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102,521 - H281DRAFT_06084 0.44 -0.2
102,570 + H281DRAFT_06084 0.53 -0.1
102,570 + H281DRAFT_06084 0.53 +0.1
102,571 - H281DRAFT_06084 0.53 +0.5
102,574 - H281DRAFT_06084 0.54 -0.2
102,737 - H281DRAFT_06084 0.82 +0.2
102,830 - +1.3
103,045 - +0.3
103,249 + +0.2
103,249 + +0.2
103,250 - -0.3
103,300 + +1.5
103,301 - +0.3
103,554 - H281DRAFT_06085 0.32 -1.5
103,778 + H281DRAFT_06085 0.59 +0.1
103,779 - H281DRAFT_06085 0.59 +0.2
103,933 - H281DRAFT_06085 0.78 +0.1
104,048 - +0.3
104,055 - -0.0
104,058 + +0.2
104,058 + +0.2
104,058 + -0.5
104,058 + +0.3
104,059 - -0.2
104,059 - -1.0
104,059 - +0.5
104,059 - +0.1
104,060 + +0.6
104,153 - -0.4
104,194 - +0.1
104,214 - +0.2
104,287 + +0.4
104,288 - +0.2
104,503 - H281DRAFT_06086 0.42 -1.2

Or see this region's nucleotide sequence