Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06081

Experiment: 3-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06080 and H281DRAFT_06081 are separated by 59 nucleotidesH281DRAFT_06081 and H281DRAFT_06082 are separated by 53 nucleotides H281DRAFT_06080: H281DRAFT_06080 - thioredoxin reductase (NADPH), at 96,856 to 98,091 _06080 H281DRAFT_06081: H281DRAFT_06081 - ubiquitin-hydrolase Zn-finger-containing protein, at 98,151 to 98,423 _06081 H281DRAFT_06082: H281DRAFT_06082 - ATP-dependent Clp protease ATP-binding subunit ClpC, at 98,477 to 101,311 _06082 Position (kb) 98 99Strain fitness (log2 ratio) -1 0 1 2at 97.162 kb on + strand, within H281DRAFT_06080at 97.163 kb on + strand, within H281DRAFT_06080at 97.163 kb on - strand, within H281DRAFT_06080at 97.190 kb on + strand, within H281DRAFT_06080at 97.190 kb on + strandat 97.191 kb on - strand, within H281DRAFT_06080at 97.193 kb on + strand, within H281DRAFT_06080at 97.193 kb on + strand, within H281DRAFT_06080at 97.386 kb on - strand, within H281DRAFT_06080at 97.386 kb on - strand, within H281DRAFT_06080at 97.408 kb on - strand, within H281DRAFT_06080at 97.408 kb on - strand, within H281DRAFT_06080at 97.426 kb on - strand, within H281DRAFT_06080at 97.498 kb on + strand, within H281DRAFT_06080at 97.501 kb on + strand, within H281DRAFT_06080at 97.547 kb on + strand, within H281DRAFT_06080at 97.547 kb on + strand, within H281DRAFT_06080at 97.547 kb on + strand, within H281DRAFT_06080at 97.548 kb on - strand, within H281DRAFT_06080at 97.549 kb on + strand, within H281DRAFT_06080at 97.549 kb on + strand, within H281DRAFT_06080at 97.549 kb on + strand, within H281DRAFT_06080at 97.549 kb on + strand, within H281DRAFT_06080at 97.549 kb on + strand, within H281DRAFT_06080at 97.549 kb on + strand, within H281DRAFT_06080at 97.619 kb on - strand, within H281DRAFT_06080at 97.619 kb on - strand, within H281DRAFT_06080at 97.699 kb on + strand, within H281DRAFT_06080at 97.704 kb on - strand, within H281DRAFT_06080at 97.886 kb on - strand, within H281DRAFT_06080at 97.886 kb on - strand, within H281DRAFT_06080at 97.971 kb on + strandat 97.972 kb on - strandat 97.972 kb on - strandat 97.972 kb on - strandat 97.972 kb on - strandat 98.082 kb on + strandat 98.128 kb on + strandat 98.128 kb on + strandat 98.144 kb on + strandat 98.145 kb on - strandat 98.245 kb on + strand, within H281DRAFT_06081at 98.252 kb on - strand, within H281DRAFT_06081at 99.188 kb on + strand, within H281DRAFT_06082at 99.189 kb on - strand, within H281DRAFT_06082

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-hydroxybutyric (C)
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97,162 + H281DRAFT_06080 0.25 +0.2
97,163 + H281DRAFT_06080 0.25 -1.1
97,163 - H281DRAFT_06080 0.25 -0.4
97,190 + H281DRAFT_06080 0.27 +0.6
97,190 + +2.5
97,191 - H281DRAFT_06080 0.27 +0.3
97,193 + H281DRAFT_06080 0.27 -0.2
97,193 + H281DRAFT_06080 0.27 -0.2
97,386 - H281DRAFT_06080 0.43 +1.5
97,386 - H281DRAFT_06080 0.43 +0.2
97,408 - H281DRAFT_06080 0.45 +0.2
97,408 - H281DRAFT_06080 0.45 -0.5
97,426 - H281DRAFT_06080 0.46 -0.8
97,498 + H281DRAFT_06080 0.52 -0.4
97,501 + H281DRAFT_06080 0.52 -0.1
97,547 + H281DRAFT_06080 0.56 -0.3
97,547 + H281DRAFT_06080 0.56 -0.1
97,547 + H281DRAFT_06080 0.56 +0.0
97,548 - H281DRAFT_06080 0.56 +0.2
97,549 + H281DRAFT_06080 0.56 +0.2
97,549 + H281DRAFT_06080 0.56 -0.4
97,549 + H281DRAFT_06080 0.56 +0.1
97,549 + H281DRAFT_06080 0.56 +0.3
97,549 + H281DRAFT_06080 0.56 -0.2
97,549 + H281DRAFT_06080 0.56 +0.1
97,619 - H281DRAFT_06080 0.62 +0.2
97,619 - H281DRAFT_06080 0.62 +0.3
97,699 + H281DRAFT_06080 0.68 -0.3
97,704 - H281DRAFT_06080 0.69 +0.4
97,886 - H281DRAFT_06080 0.83 +0.0
97,886 - H281DRAFT_06080 0.83 +0.1
97,971 + +0.6
97,972 - -0.1
97,972 - -1.2
97,972 - +0.6
97,972 - -0.2
98,082 + +0.7
98,128 + -0.1
98,128 + +0.2
98,144 + +0.6
98,145 - +0.3
98,245 + H281DRAFT_06081 0.34 -1.4
98,252 - H281DRAFT_06081 0.37 -0.4
99,188 + H281DRAFT_06082 0.25 +0.0
99,189 - H281DRAFT_06082 0.25 -0.2

Or see this region's nucleotide sequence