Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04635

Experiment: 3-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04634 and H281DRAFT_04635 are separated by 60 nucleotidesH281DRAFT_04635 and H281DRAFT_04636 are separated by 9 nucleotides H281DRAFT_04634: H281DRAFT_04634 - ATP-binding cassette, subfamily B, at 32,255 to 34,144 _04634 H281DRAFT_04635: H281DRAFT_04635 - Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon), at 34,205 to 34,912 _04635 H281DRAFT_04636: H281DRAFT_04636 - hypothetical protein, at 34,922 to 36,034 _04636 Position (kb) 34 35Strain fitness (log2 ratio) -2 -1 0 1at 33.215 kb on + strand, within H281DRAFT_04634at 33.215 kb on + strand, within H281DRAFT_04634at 33.217 kb on + strand, within H281DRAFT_04634at 33.218 kb on - strand, within H281DRAFT_04634at 33.218 kb on - strand, within H281DRAFT_04634at 33.389 kb on + strand, within H281DRAFT_04634at 33.427 kb on + strand, within H281DRAFT_04634at 33.512 kb on + strand, within H281DRAFT_04634at 33.544 kb on + strand, within H281DRAFT_04634at 33.547 kb on + strand, within H281DRAFT_04634at 33.644 kb on + strand, within H281DRAFT_04634at 33.647 kb on + strand, within H281DRAFT_04634at 33.647 kb on + strand, within H281DRAFT_04634at 33.647 kb on + strand, within H281DRAFT_04634at 33.647 kb on + strandat 33.648 kb on - strand, within H281DRAFT_04634at 33.749 kb on + strand, within H281DRAFT_04634at 33.750 kb on - strand, within H281DRAFT_04634at 34.278 kb on + strandat 34.278 kb on + strand, within H281DRAFT_04635at 34.323 kb on + strand, within H281DRAFT_04635at 34.932 kb on + strandat 35.108 kb on - strand, within H281DRAFT_04636at 35.108 kb on - strand, within H281DRAFT_04636at 35.143 kb on - strand, within H281DRAFT_04636at 35.200 kb on - strand, within H281DRAFT_04636at 35.202 kb on + strand, within H281DRAFT_04636at 35.202 kb on + strand, within H281DRAFT_04636at 35.203 kb on - strand, within H281DRAFT_04636at 35.274 kb on + strand, within H281DRAFT_04636at 35.274 kb on + strand, within H281DRAFT_04636at 35.274 kb on + strand, within H281DRAFT_04636at 35.275 kb on - strand, within H281DRAFT_04636at 35.275 kb on - strand, within H281DRAFT_04636at 35.275 kb on - strand, within H281DRAFT_04636at 35.279 kb on - strand, within H281DRAFT_04636at 35.279 kb on - strand, within H281DRAFT_04636at 35.279 kb on - strand, within H281DRAFT_04636at 35.289 kb on + strand, within H281DRAFT_04636at 35.312 kb on + strand, within H281DRAFT_04636at 35.683 kb on - strand, within H281DRAFT_04636at 35.683 kb on - strand, within H281DRAFT_04636at 35.883 kb on + strand, within H281DRAFT_04636

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-hydroxybutyric (C)
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33,215 + H281DRAFT_04634 0.51 +1.1
33,215 + H281DRAFT_04634 0.51 +0.1
33,217 + H281DRAFT_04634 0.51 -1.1
33,218 - H281DRAFT_04634 0.51 +0.3
33,218 - H281DRAFT_04634 0.51 +0.5
33,389 + H281DRAFT_04634 0.60 -1.2
33,427 + H281DRAFT_04634 0.62 -0.1
33,512 + H281DRAFT_04634 0.67 +0.3
33,544 + H281DRAFT_04634 0.68 +0.6
33,547 + H281DRAFT_04634 0.68 +0.4
33,644 + H281DRAFT_04634 0.73 -0.2
33,647 + H281DRAFT_04634 0.74 +0.1
33,647 + H281DRAFT_04634 0.74 -0.1
33,647 + H281DRAFT_04634 0.74 +0.1
33,647 + -1.3
33,648 - H281DRAFT_04634 0.74 +0.1
33,749 + H281DRAFT_04634 0.79 -0.1
33,750 - H281DRAFT_04634 0.79 +1.2
34,278 + -0.7
34,278 + H281DRAFT_04635 0.10 -2.3
34,323 + H281DRAFT_04635 0.17 -1.4
34,932 + +0.9
35,108 - H281DRAFT_04636 0.17 -0.0
35,108 - H281DRAFT_04636 0.17 +0.3
35,143 - H281DRAFT_04636 0.20 -2.6
35,200 - H281DRAFT_04636 0.25 -1.6
35,202 + H281DRAFT_04636 0.25 -0.2
35,202 + H281DRAFT_04636 0.25 -0.8
35,203 - H281DRAFT_04636 0.25 +1.3
35,274 + H281DRAFT_04636 0.32 +0.3
35,274 + H281DRAFT_04636 0.32 -0.6
35,274 + H281DRAFT_04636 0.32 +0.2
35,275 - H281DRAFT_04636 0.32 +0.0
35,275 - H281DRAFT_04636 0.32 -0.5
35,275 - H281DRAFT_04636 0.32 -0.0
35,279 - H281DRAFT_04636 0.32 +0.1
35,279 - H281DRAFT_04636 0.32 -0.1
35,279 - H281DRAFT_04636 0.32 -0.4
35,289 + H281DRAFT_04636 0.33 +0.3
35,312 + H281DRAFT_04636 0.35 +0.7
35,683 - H281DRAFT_04636 0.68 +1.7
35,683 - H281DRAFT_04636 0.68 +0.1
35,883 + H281DRAFT_04636 0.86 +0.4

Or see this region's nucleotide sequence