Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02932

Experiment: 3-hydroxybutyric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02930 and H281DRAFT_02931 are separated by 44 nucleotidesH281DRAFT_02931 and H281DRAFT_02932 are separated by 481 nucleotidesH281DRAFT_02932 and H281DRAFT_02933 are separated by 159 nucleotides H281DRAFT_02930: H281DRAFT_02930 - Superinfection immunity protein, at 542,123 to 542,434 _02930 H281DRAFT_02931: H281DRAFT_02931 - Uncharacterized conserved protein YodC, DUF2158 family, at 542,479 to 542,748 _02931 H281DRAFT_02932: H281DRAFT_02932 - Major Facilitator Superfamily protein, at 543,230 to 543,679 _02932 H281DRAFT_02933: H281DRAFT_02933 - Tetratricopeptide repeat-containing protein, at 543,839 to 544,753 _02933 Position (kb) 543 544Strain fitness (log2 ratio) -2 -1 0 1 2at 542.645 kb on + strand, within H281DRAFT_02931at 542.646 kb on - strand, within H281DRAFT_02931at 542.649 kb on + strand, within H281DRAFT_02931at 542.649 kb on + strand, within H281DRAFT_02931at 542.650 kb on - strand, within H281DRAFT_02931at 542.650 kb on - strand, within H281DRAFT_02931at 542.722 kb on - strandat 542.722 kb on - strandat 542.748 kb on + strandat 542.748 kb on + strandat 542.749 kb on - strandat 542.749 kb on - strandat 542.771 kb on - strandat 542.812 kb on - strandat 543.000 kb on + strandat 543.000 kb on + strandat 543.001 kb on - strandat 543.082 kb on - strandat 543.082 kb on - strandat 543.177 kb on + strandat 543.201 kb on + strandat 543.416 kb on - strand, within H281DRAFT_02932at 543.461 kb on + strand, within H281DRAFT_02932at 543.461 kb on + strand, within H281DRAFT_02932at 543.558 kb on - strand, within H281DRAFT_02932at 543.571 kb on - strand, within H281DRAFT_02932at 543.571 kb on - strand, within H281DRAFT_02932at 543.630 kb on + strand, within H281DRAFT_02932at 543.631 kb on - strand, within H281DRAFT_02932at 543.631 kb on - strand, within H281DRAFT_02932at 543.631 kb on - strand, within H281DRAFT_02932at 543.633 kb on + strand, within H281DRAFT_02932at 543.633 kb on + strand, within H281DRAFT_02932at 543.634 kb on - strand, within H281DRAFT_02932at 543.634 kb on - strand, within H281DRAFT_02932at 543.778 kb on + strandat 543.778 kb on + strandat 543.778 kb on + strandat 543.779 kb on - strandat 543.779 kb on - strandat 543.840 kb on + strandat 543.841 kb on - strandat 543.853 kb on + strandat 543.882 kb on - strandat 543.882 kb on - strandat 543.985 kb on + strand, within H281DRAFT_02933at 543.985 kb on + strand, within H281DRAFT_02933at 543.985 kb on + strand, within H281DRAFT_02933at 543.985 kb on + strand, within H281DRAFT_02933at 543.985 kb on + strand, within H281DRAFT_02933at 543.985 kb on + strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.986 kb on - strand, within H281DRAFT_02933at 543.987 kb on + strand, within H281DRAFT_02933at 543.987 kb on + strand, within H281DRAFT_02933at 543.988 kb on - strand, within H281DRAFT_02933at 544.082 kb on + strand, within H281DRAFT_02933at 544.190 kb on + strand, within H281DRAFT_02933at 544.193 kb on - strand, within H281DRAFT_02933at 544.193 kb on - strand, within H281DRAFT_02933at 544.193 kb on - strand, within H281DRAFT_02933at 544.445 kb on - strand, within H281DRAFT_02933at 544.459 kb on - strand, within H281DRAFT_02933at 544.459 kb on - strand, within H281DRAFT_02933at 544.577 kb on - strand, within H281DRAFT_02933at 544.582 kb on + strand, within H281DRAFT_02933at 544.582 kb on + strand, within H281DRAFT_02933at 544.586 kb on + strand, within H281DRAFT_02933at 544.587 kb on - strand, within H281DRAFT_02933at 544.643 kb on + strand, within H281DRAFT_02933at 544.669 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-hydroxybutyric (C)
remove
542,645 + H281DRAFT_02931 0.61 +0.9
542,646 - H281DRAFT_02931 0.62 +1.3
542,649 + H281DRAFT_02931 0.63 +0.9
542,649 + H281DRAFT_02931 0.63 +0.6
542,650 - H281DRAFT_02931 0.63 +0.5
542,650 - H281DRAFT_02931 0.63 +0.7
542,722 - +0.3
542,722 - +0.1
542,748 + +0.5
542,748 + +0.8
542,749 - +0.6
542,749 - +0.7
542,771 - +0.7
542,812 - +0.2
543,000 + -0.3
543,000 + +0.7
543,001 - -1.0
543,082 - -0.3
543,082 - +0.1
543,177 + -0.4
543,201 + +0.8
543,416 - H281DRAFT_02932 0.41 -0.9
543,461 + H281DRAFT_02932 0.51 +0.4
543,461 + H281DRAFT_02932 0.51 +0.4
543,558 - H281DRAFT_02932 0.73 -0.3
543,571 - H281DRAFT_02932 0.76 +0.2
543,571 - H281DRAFT_02932 0.76 +0.2
543,630 + H281DRAFT_02932 0.89 +0.7
543,631 - H281DRAFT_02932 0.89 -0.5
543,631 - H281DRAFT_02932 0.89 -2.1
543,631 - H281DRAFT_02932 0.89 -0.0
543,633 + H281DRAFT_02932 0.90 +1.1
543,633 + H281DRAFT_02932 0.90 +0.5
543,634 - H281DRAFT_02932 0.90 +0.1
543,634 - H281DRAFT_02932 0.90 -0.1
543,778 + +0.1
543,778 + +0.4
543,778 + +0.1
543,779 - -0.2
543,779 - -1.1
543,840 + +0.9
543,841 - +0.4
543,853 + +0.1
543,882 - -0.0
543,882 - +0.5
543,985 + H281DRAFT_02933 0.16 +0.1
543,985 + H281DRAFT_02933 0.16 +0.6
543,985 + H281DRAFT_02933 0.16 +0.4
543,985 + H281DRAFT_02933 0.16 +0.2
543,985 + H281DRAFT_02933 0.16 +0.3
543,985 + H281DRAFT_02933 0.16 +0.4
543,986 - H281DRAFT_02933 0.16 -0.3
543,986 - H281DRAFT_02933 0.16 +0.2
543,986 - H281DRAFT_02933 0.16 +0.1
543,986 - H281DRAFT_02933 0.16 -0.1
543,986 - H281DRAFT_02933 0.16 -0.1
543,986 - H281DRAFT_02933 0.16 +0.7
543,987 + H281DRAFT_02933 0.16 +0.0
543,987 + H281DRAFT_02933 0.16 +0.5
543,988 - H281DRAFT_02933 0.16 +0.5
544,082 + H281DRAFT_02933 0.27 -0.0
544,190 + H281DRAFT_02933 0.38 -0.3
544,193 - H281DRAFT_02933 0.39 -0.5
544,193 - H281DRAFT_02933 0.39 +0.2
544,193 - H281DRAFT_02933 0.39 +0.4
544,445 - H281DRAFT_02933 0.66 +0.5
544,459 - H281DRAFT_02933 0.68 +2.2
544,459 - H281DRAFT_02933 0.68 -0.7
544,577 - H281DRAFT_02933 0.81 +0.6
544,582 + H281DRAFT_02933 0.81 +0.1
544,582 + H281DRAFT_02933 0.81 +0.3
544,586 + H281DRAFT_02933 0.82 +0.5
544,587 - H281DRAFT_02933 0.82 +1.0
544,643 + H281DRAFT_02933 0.88 +0.6
544,669 - +0.4

Or see this region's nucleotide sequence