Experiment: 3-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02375 and H281DRAFT_02376 overlap by 4 nucleotides H281DRAFT_02376 and H281DRAFT_02377 are separated by 55 nucleotides
H281DRAFT_02375: H281DRAFT_02375 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 537,484 to 538,263
_02375
H281DRAFT_02376: H281DRAFT_02376 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 538,260 to 539,018
_02376
H281DRAFT_02377: H281DRAFT_02377 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 539,074 to 540,288
_02377
Position (kb) 538
539
540 Strain fitness (log2 ratio) -2
-1
0
1 at 537.451 kb on + strand at 537.464 kb on + strand at 537.762 kb on - strand, within H281DRAFT_02375 at 538.181 kb on - strand, within H281DRAFT_02375 at 538.181 kb on - strand, within H281DRAFT_02375 at 538.181 kb on - strand, within H281DRAFT_02375 at 538.219 kb on + strand at 538.219 kb on + strand at 538.219 kb on + strand at 538.219 kb on + strand at 538.219 kb on + strand at 538.220 kb on - strand at 538.220 kb on - strand at 538.220 kb on - strand at 538.221 kb on + strand at 538.221 kb on + strand at 538.266 kb on - strand at 538.266 kb on - strand at 538.557 kb on + strand, within H281DRAFT_02376 at 538.755 kb on - strand, within H281DRAFT_02376 at 538.926 kb on + strand, within H281DRAFT_02376 at 538.926 kb on + strand, within H281DRAFT_02376 at 538.927 kb on - strand, within H281DRAFT_02376 at 538.927 kb on - strand, within H281DRAFT_02376 at 538.927 kb on - strand, within H281DRAFT_02376 at 539.005 kb on + strand at 539.006 kb on - strand at 539.014 kb on + strand at 539.015 kb on - strand at 539.016 kb on + strand at 539.016 kb on + strand at 539.016 kb on + strand at 539.196 kb on + strand, within H281DRAFT_02377 at 539.196 kb on + strand, within H281DRAFT_02377 at 539.196 kb on + strand, within H281DRAFT_02377 at 539.196 kb on + strand, within H281DRAFT_02377 at 539.197 kb on - strand, within H281DRAFT_02377 at 539.197 kb on - strand, within H281DRAFT_02377 at 539.210 kb on - strand, within H281DRAFT_02377 at 539.381 kb on + strand, within H281DRAFT_02377 at 539.452 kb on + strand, within H281DRAFT_02377 at 539.453 kb on - strand, within H281DRAFT_02377 at 539.506 kb on + strand, within H281DRAFT_02377 at 539.507 kb on - strand, within H281DRAFT_02377 at 539.519 kb on - strand, within H281DRAFT_02377 at 539.524 kb on + strand, within H281DRAFT_02377 at 539.524 kb on + strand, within H281DRAFT_02377 at 539.525 kb on - strand, within H281DRAFT_02377 at 539.590 kb on + strand, within H281DRAFT_02377 at 539.608 kb on + strand, within H281DRAFT_02377 at 539.609 kb on - strand, within H281DRAFT_02377 at 539.609 kb on - strand, within H281DRAFT_02377 at 539.609 kb on - strand, within H281DRAFT_02377 at 539.793 kb on + strand, within H281DRAFT_02377 at 539.793 kb on + strand, within H281DRAFT_02377 at 539.794 kb on - strand, within H281DRAFT_02377 at 539.794 kb on - strand, within H281DRAFT_02377 at 539.856 kb on + strand, within H281DRAFT_02377 at 539.871 kb on + strand, within H281DRAFT_02377 at 539.871 kb on + strand at 539.913 kb on + strand, within H281DRAFT_02377 at 539.962 kb on + strand, within H281DRAFT_02377 at 539.962 kb on + strand, within H281DRAFT_02377
Per-strain Table
Position Strand Gene LocusTag Fraction 3-hydroxybutyric (C) remove 537,451 + +0.2 537,464 + +0.9 537,762 - H281DRAFT_02375 0.36 -0.0 538,181 - H281DRAFT_02375 0.89 -0.3 538,181 - H281DRAFT_02375 0.89 -0.1 538,181 - H281DRAFT_02375 0.89 -0.1 538,219 + -0.2 538,219 + -0.1 538,219 + +0.5 538,219 + -0.4 538,219 + +0.0 538,220 - -1.4 538,220 - -0.1 538,220 - -0.2 538,221 + +0.1 538,221 + -0.2 538,266 - -1.0 538,266 - -0.1 538,557 + H281DRAFT_02376 0.39 -1.0 538,755 - H281DRAFT_02376 0.65 +0.5 538,926 + H281DRAFT_02376 0.88 +0.2 538,926 + H281DRAFT_02376 0.88 -0.4 538,927 - H281DRAFT_02376 0.88 +0.1 538,927 - H281DRAFT_02376 0.88 -0.6 538,927 - H281DRAFT_02376 0.88 -0.2 539,005 + -0.9 539,006 - -0.3 539,014 + +0.4 539,015 - -2.0 539,016 + +0.0 539,016 + +0.2 539,016 + +0.7 539,196 + H281DRAFT_02377 0.10 +0.8 539,196 + H281DRAFT_02377 0.10 +0.1 539,196 + H281DRAFT_02377 0.10 +0.2 539,196 + H281DRAFT_02377 0.10 -0.1 539,197 - H281DRAFT_02377 0.10 +0.2 539,197 - H281DRAFT_02377 0.10 -0.4 539,210 - H281DRAFT_02377 0.11 +0.1 539,381 + H281DRAFT_02377 0.25 +0.4 539,452 + H281DRAFT_02377 0.31 -1.2 539,453 - H281DRAFT_02377 0.31 -0.6 539,506 + H281DRAFT_02377 0.36 -0.6 539,507 - H281DRAFT_02377 0.36 +0.5 539,519 - H281DRAFT_02377 0.37 -0.0 539,524 + H281DRAFT_02377 0.37 +0.8 539,524 + H281DRAFT_02377 0.37 -0.2 539,525 - H281DRAFT_02377 0.37 -0.0 539,590 + H281DRAFT_02377 0.42 -0.4 539,608 + H281DRAFT_02377 0.44 -0.7 539,609 - H281DRAFT_02377 0.44 -0.1 539,609 - H281DRAFT_02377 0.44 +1.0 539,609 - H281DRAFT_02377 0.44 -0.5 539,793 + H281DRAFT_02377 0.59 -0.1 539,793 + H281DRAFT_02377 0.59 -0.1 539,794 - H281DRAFT_02377 0.59 -0.4 539,794 - H281DRAFT_02377 0.59 +0.0 539,856 + H281DRAFT_02377 0.64 -0.1 539,871 + H281DRAFT_02377 0.66 +0.2 539,871 + +0.9 539,913 + H281DRAFT_02377 0.69 +0.3 539,962 + H281DRAFT_02377 0.73 +0.2 539,962 + H281DRAFT_02377 0.73 -0.2
Or see this region's nucleotide sequence