Strain Fitness in Marinobacter adhaerens HP15 around HP15_933

Experiment: L-Phenylalanine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_932 and HP15_933 overlap by 4 nucleotidesHP15_933 and HP15_934 are separated by 12 nucleotidesHP15_934 and HP15_935 are separated by 24 nucleotides HP15_932: HP15_932 - efflux transporter, RND family, MFP subunit, at 945,621 to 946,790 _932 HP15_933: HP15_933 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family, at 946,787 to 949,891 _933 HP15_934: HP15_934 - extradiol ring-cleavage dioxygenase, class III enzyme, subunit B, at 949,904 to 950,677 _934 HP15_935: HP15_935 - DoxD-like family protein, at 950,702 to 951,142 _935 Position (kb) 946 947 948 949 950Strain fitness (log2 ratio) -1 0 1 2 3at 945.893 kb on - strand, within HP15_932at 946.066 kb on - strand, within HP15_932at 946.068 kb on + strand, within HP15_932at 946.076 kb on - strand, within HP15_932at 946.109 kb on - strand, within HP15_932at 946.146 kb on + strand, within HP15_932at 946.154 kb on - strand, within HP15_932at 946.196 kb on - strand, within HP15_932at 946.219 kb on + strand, within HP15_932at 946.327 kb on - strand, within HP15_932at 946.363 kb on + strand, within HP15_932at 946.363 kb on + strand, within HP15_932at 946.476 kb on - strand, within HP15_932at 946.483 kb on - strand, within HP15_932at 946.495 kb on - strand, within HP15_932at 946.619 kb on - strand, within HP15_932at 946.711 kb on + strandat 946.782 kb on + strandat 946.850 kb on - strandat 946.873 kb on - strandat 947.001 kb on + strandat 947.059 kb on - strandat 947.068 kb on - strandat 947.108 kb on + strand, within HP15_933at 947.131 kb on - strand, within HP15_933at 947.205 kb on + strand, within HP15_933at 947.205 kb on + strand, within HP15_933at 947.205 kb on + strand, within HP15_933at 947.205 kb on + strand, within HP15_933at 947.212 kb on + strand, within HP15_933at 947.239 kb on - strand, within HP15_933at 947.249 kb on - strand, within HP15_933at 947.282 kb on + strand, within HP15_933at 947.332 kb on + strand, within HP15_933at 947.340 kb on - strand, within HP15_933at 947.341 kb on - strand, within HP15_933at 947.360 kb on - strand, within HP15_933at 947.391 kb on + strand, within HP15_933at 947.453 kb on - strand, within HP15_933at 947.479 kb on - strand, within HP15_933at 947.500 kb on - strand, within HP15_933at 947.582 kb on + strand, within HP15_933at 947.583 kb on - strand, within HP15_933at 947.583 kb on - strand, within HP15_933at 947.657 kb on - strand, within HP15_933at 947.707 kb on + strand, within HP15_933at 947.755 kb on + strand, within HP15_933at 947.755 kb on + strand, within HP15_933at 947.765 kb on + strand, within HP15_933at 947.773 kb on - strand, within HP15_933at 947.814 kb on + strand, within HP15_933at 947.824 kb on + strand, within HP15_933at 947.827 kb on - strand, within HP15_933at 947.865 kb on - strand, within HP15_933at 947.920 kb on + strand, within HP15_933at 947.953 kb on - strand, within HP15_933at 947.967 kb on + strand, within HP15_933at 947.977 kb on + strand, within HP15_933at 947.977 kb on + strand, within HP15_933at 947.981 kb on + strand, within HP15_933at 948.254 kb on - strand, within HP15_933at 948.256 kb on + strand, within HP15_933at 948.256 kb on - strand, within HP15_933at 948.278 kb on + strand, within HP15_933at 948.313 kb on + strand, within HP15_933at 948.365 kb on - strand, within HP15_933at 948.382 kb on + strand, within HP15_933at 948.410 kb on - strand, within HP15_933at 948.440 kb on - strand, within HP15_933at 948.450 kb on - strand, within HP15_933at 948.479 kb on + strand, within HP15_933at 948.487 kb on - strand, within HP15_933at 948.545 kb on + strand, within HP15_933at 948.729 kb on + strand, within HP15_933at 948.736 kb on + strand, within HP15_933at 948.846 kb on - strand, within HP15_933at 948.849 kb on + strand, within HP15_933at 948.893 kb on + strand, within HP15_933at 948.977 kb on + strand, within HP15_933at 948.978 kb on - strand, within HP15_933at 948.983 kb on + strand, within HP15_933at 948.990 kb on + strand, within HP15_933at 949.028 kb on + strand, within HP15_933at 949.085 kb on - strand, within HP15_933at 949.112 kb on - strand, within HP15_933at 949.119 kb on + strand, within HP15_933at 949.127 kb on - strand, within HP15_933at 949.189 kb on + strand, within HP15_933at 949.254 kb on + strand, within HP15_933at 949.273 kb on - strand, within HP15_933at 949.333 kb on - strand, within HP15_933at 949.529 kb on - strand, within HP15_933at 949.553 kb on + strand, within HP15_933at 949.559 kb on + strand, within HP15_933at 949.691 kb on + strandat 949.699 kb on - strandat 949.701 kb on - strandat 949.787 kb on - strandat 949.932 kb on + strandat 949.940 kb on - strandat 950.087 kb on - strand, within HP15_934at 950.110 kb on + strand, within HP15_934at 950.146 kb on + strand, within HP15_934at 950.272 kb on - strand, within HP15_934at 950.399 kb on - strand, within HP15_934at 950.411 kb on - strand, within HP15_934at 950.414 kb on + strand, within HP15_934at 950.471 kb on + strand, within HP15_934at 950.585 kb on + strand, within HP15_934at 950.645 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
remove
945,893 - HP15_932 0.23 +1.3
946,066 - HP15_932 0.38 -0.8
946,068 + HP15_932 0.38 +2.0
946,076 - HP15_932 0.39 -1.1
946,109 - HP15_932 0.42 -0.4
946,146 + HP15_932 0.45 -1.0
946,154 - HP15_932 0.46 +3.7
946,196 - HP15_932 0.49 +1.5
946,219 + HP15_932 0.51 +0.7
946,327 - HP15_932 0.60 +0.8
946,363 + HP15_932 0.63 +0.2
946,363 + HP15_932 0.63 -0.4
946,476 - HP15_932 0.73 +0.5
946,483 - HP15_932 0.74 -0.4
946,495 - HP15_932 0.75 +0.7
946,619 - HP15_932 0.85 -0.0
946,711 + -0.2
946,782 + -0.1
946,850 - -0.5
946,873 - -0.5
947,001 + +0.7
947,059 - +0.6
947,068 - +0.0
947,108 + HP15_933 0.10 -0.2
947,131 - HP15_933 0.11 +1.6
947,205 + HP15_933 0.13 -1.2
947,205 + HP15_933 0.13 +0.4
947,205 + HP15_933 0.13 +0.1
947,205 + HP15_933 0.13 -0.7
947,212 + HP15_933 0.14 +0.7
947,239 - HP15_933 0.15 -0.3
947,249 - HP15_933 0.15 -0.4
947,282 + HP15_933 0.16 -0.2
947,332 + HP15_933 0.18 -0.2
947,340 - HP15_933 0.18 -0.6
947,341 - HP15_933 0.18 -0.2
947,360 - HP15_933 0.18 +2.4
947,391 + HP15_933 0.19 +0.4
947,453 - HP15_933 0.21 +0.8
947,479 - HP15_933 0.22 +0.4
947,500 - HP15_933 0.23 +0.1
947,582 + HP15_933 0.26 -0.2
947,583 - HP15_933 0.26 -0.3
947,583 - HP15_933 0.26 -0.7
947,657 - HP15_933 0.28 +0.5
947,707 + HP15_933 0.30 -0.5
947,755 + HP15_933 0.31 -0.6
947,755 + HP15_933 0.31 -0.3
947,765 + HP15_933 0.31 +0.0
947,773 - HP15_933 0.32 +0.2
947,814 + HP15_933 0.33 +1.1
947,824 + HP15_933 0.33 -0.1
947,827 - HP15_933 0.33 -0.2
947,865 - HP15_933 0.35 -0.2
947,920 + HP15_933 0.36 -0.1
947,953 - HP15_933 0.38 +1.6
947,967 + HP15_933 0.38 -0.0
947,977 + HP15_933 0.38 -0.5
947,977 + HP15_933 0.38 +1.4
947,981 + HP15_933 0.38 +0.6
948,254 - HP15_933 0.47 -0.3
948,256 + HP15_933 0.47 +0.3
948,256 - HP15_933 0.47 +0.2
948,278 + HP15_933 0.48 -0.6
948,313 + HP15_933 0.49 -0.8
948,365 - HP15_933 0.51 -0.9
948,382 + HP15_933 0.51 -0.6
948,410 - HP15_933 0.52 -0.0
948,440 - HP15_933 0.53 +1.4
948,450 - HP15_933 0.54 +1.6
948,479 + HP15_933 0.54 +1.1
948,487 - HP15_933 0.55 +1.2
948,545 + HP15_933 0.57 +1.3
948,729 + HP15_933 0.63 -0.0
948,736 + HP15_933 0.63 +1.5
948,846 - HP15_933 0.66 +1.5
948,849 + HP15_933 0.66 -1.2
948,893 + HP15_933 0.68 +0.4
948,977 + HP15_933 0.71 +1.4
948,978 - HP15_933 0.71 -0.1
948,983 + HP15_933 0.71 +0.5
948,990 + HP15_933 0.71 +1.3
949,028 + HP15_933 0.72 +0.0
949,085 - HP15_933 0.74 +0.3
949,112 - HP15_933 0.75 +0.2
949,119 + HP15_933 0.75 +0.0
949,127 - HP15_933 0.75 +1.2
949,189 + HP15_933 0.77 -0.4
949,254 + HP15_933 0.79 +1.4
949,273 - HP15_933 0.80 +0.3
949,333 - HP15_933 0.82 +1.3
949,529 - HP15_933 0.88 -0.3
949,553 + HP15_933 0.89 +2.6
949,559 + HP15_933 0.89 +1.1
949,691 + +1.8
949,699 - +1.5
949,701 - +0.5
949,787 - +0.9
949,932 + -0.2
949,940 - -0.3
950,087 - HP15_934 0.24 +1.6
950,110 + HP15_934 0.27 -0.2
950,146 + HP15_934 0.31 +0.0
950,272 - HP15_934 0.48 +1.6
950,399 - HP15_934 0.64 -1.0
950,411 - HP15_934 0.66 -0.1
950,414 + HP15_934 0.66 +0.1
950,471 + HP15_934 0.73 -0.5
950,585 + HP15_934 0.88 -0.9
950,645 + -0.8

Or see this region's nucleotide sequence