Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_820 and HP15_821 are separated by 153 nucleotides HP15_821 and HP15_822 are separated by 188 nucleotides
HP15_820: HP15_820 - transcriptional regulator, LysR family protein, at 837,843 to 838,736
_820
HP15_821: HP15_821 - acyl-CoA dehydrogenase family protein, at 838,890 to 840,101
_821
HP15_822: HP15_822 - short-chain dehydrogenase/reductase SDR, at 840,290 to 841,108
_822
Position (kb) 838
839
840
841 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.966 kb on - strand, within HP15_820 at 838.088 kb on - strand, within HP15_820 at 838.103 kb on + strand, within HP15_820 at 838.237 kb on + strand, within HP15_820 at 838.725 kb on + strand at 838.733 kb on - strand at 838.822 kb on + strand at 838.822 kb on + strand at 838.822 kb on + strand at 838.830 kb on - strand at 838.830 kb on - strand at 838.842 kb on + strand at 839.009 kb on + strand at 839.119 kb on - strand, within HP15_821 at 839.271 kb on + strand, within HP15_821 at 839.276 kb on + strand, within HP15_821 at 839.487 kb on - strand, within HP15_821 at 839.487 kb on - strand, within HP15_821 at 839.493 kb on + strand, within HP15_821 at 839.564 kb on - strand, within HP15_821 at 839.653 kb on + strand, within HP15_821 at 839.820 kb on - strand, within HP15_821 at 839.883 kb on + strand, within HP15_821 at 839.925 kb on + strand, within HP15_821 at 839.940 kb on - strand, within HP15_821 at 839.973 kb on - strand, within HP15_821 at 840.073 kb on + strand at 840.073 kb on + strand at 840.073 kb on + strand at 840.073 kb on + strand at 840.073 kb on + strand at 840.081 kb on - strand at 840.081 kb on - strand at 840.081 kb on - strand at 840.081 kb on - strand at 840.081 kb on - strand at 840.337 kb on + strand at 840.401 kb on - strand, within HP15_822 at 840.551 kb on + strand, within HP15_822 at 840.746 kb on - strand, within HP15_822 at 840.746 kb on - strand, within HP15_822 at 840.748 kb on + strand, within HP15_822 at 840.820 kb on - strand, within HP15_822 at 840.962 kb on + strand, within HP15_822 at 840.983 kb on + strand, within HP15_822 at 840.991 kb on - strand, within HP15_822 at 841.001 kb on - strand, within HP15_822 at 841.042 kb on - strand at 841.042 kb on - strand at 841.067 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 837,966 - HP15_820 0.14 +1.2 838,088 - HP15_820 0.27 -0.4 838,103 + HP15_820 0.29 -2.1 838,237 + HP15_820 0.44 -0.8 838,725 + -1.3 838,733 - +1.2 838,822 + +1.4 838,822 + +1.3 838,822 + +1.6 838,830 - +0.2 838,830 - -0.1 838,842 + -0.1 839,009 + -0.3 839,119 - HP15_821 0.19 +0.0 839,271 + HP15_821 0.31 +1.7 839,276 + HP15_821 0.32 +1.2 839,487 - HP15_821 0.49 +1.6 839,487 - HP15_821 0.49 +1.2 839,493 + HP15_821 0.50 +1.9 839,564 - HP15_821 0.56 +0.4 839,653 + HP15_821 0.63 -1.8 839,820 - HP15_821 0.77 -2.0 839,883 + HP15_821 0.82 -0.8 839,925 + HP15_821 0.85 +1.6 839,940 - HP15_821 0.87 -0.2 839,973 - HP15_821 0.89 -0.6 840,073 + +0.7 840,073 + -0.6 840,073 + +1.2 840,073 + -1.2 840,073 + -0.2 840,081 - +0.2 840,081 - -0.6 840,081 - +1.7 840,081 - -0.2 840,081 - +1.2 840,337 + -0.0 840,401 - HP15_822 0.14 -1.2 840,551 + HP15_822 0.32 -1.0 840,746 - HP15_822 0.56 -0.4 840,746 - HP15_822 0.56 -0.3 840,748 + HP15_822 0.56 +0.4 840,820 - HP15_822 0.65 +1.1 840,962 + HP15_822 0.82 -1.1 840,983 + HP15_822 0.85 +1.5 840,991 - HP15_822 0.86 -1.7 841,001 - HP15_822 0.87 -0.0 841,042 - +0.8 841,042 - -0.6 841,067 + -0.4
Or see this region's nucleotide sequence