Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_813 and HP15_814 are separated by 29 nucleotides HP15_814 and HP15_815 are separated by 9 nucleotides HP15_815 and HP15_816 overlap by 8 nucleotides HP15_816 and HP15_817 are separated by 7 nucleotides
HP15_813: HP15_813 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 832,112 to 833,281
_813
HP15_814: HP15_814 - aspartate aminotransferase, at 833,311 to 834,561
_814
HP15_815: HP15_815 - uncharacterized conserved protein UCP037225-like protein, at 834,571 to 834,762
_815
HP15_816: HP15_816 - secreted protein containing DUF1439, at 834,755 to 835,327
_816
HP15_817: HP15_817 - 3-isopropylmalate dehydrogenase, at 835,335 to 836,489
_817
Position (kb) 833
834
835 Strain fitness (log2 ratio) -1
0
1
2 at 832.450 kb on + strand, within HP15_813 at 832.457 kb on + strand, within HP15_813 at 832.555 kb on + strand, within HP15_813 at 832.829 kb on - strand, within HP15_813 at 832.829 kb on - strand, within HP15_813 at 832.841 kb on + strand, within HP15_813 at 832.849 kb on - strand, within HP15_813 at 832.953 kb on + strand, within HP15_813 at 832.975 kb on + strand, within HP15_813 at 832.975 kb on + strand, within HP15_813 at 833.084 kb on - strand, within HP15_813 at 833.150 kb on + strand, within HP15_813 at 833.150 kb on + strand, within HP15_813 at 833.164 kb on + strand, within HP15_813 at 833.267 kb on + strand at 833.283 kb on - strand at 833.293 kb on - strand at 833.316 kb on - strand at 833.339 kb on - strand at 833.391 kb on - strand at 833.645 kb on + strand, within HP15_814 at 833.669 kb on - strand, within HP15_814 at 833.769 kb on - strand, within HP15_814 at 833.784 kb on - strand, within HP15_814 at 833.820 kb on - strand, within HP15_814 at 833.882 kb on - strand, within HP15_814 at 833.934 kb on - strand, within HP15_814 at 833.993 kb on + strand, within HP15_814 at 834.009 kb on - strand, within HP15_814 at 834.043 kb on + strand, within HP15_814 at 834.229 kb on + strand, within HP15_814 at 834.327 kb on - strand, within HP15_814 at 834.369 kb on + strand, within HP15_814 at 834.389 kb on + strand, within HP15_814 at 834.389 kb on + strand, within HP15_814 at 834.397 kb on - strand, within HP15_814 at 834.402 kb on - strand, within HP15_814 at 834.528 kb on + strand at 834.563 kb on - strand at 834.602 kb on - strand, within HP15_815 at 834.934 kb on + strand, within HP15_816 at 834.951 kb on + strand, within HP15_816 at 834.963 kb on + strand, within HP15_816 at 835.045 kb on - strand, within HP15_816 at 835.057 kb on + strand, within HP15_816 at 835.065 kb on - strand, within HP15_816 at 835.119 kb on - strand, within HP15_816 at 835.139 kb on - strand, within HP15_816 at 835.166 kb on + strand, within HP15_816 at 835.431 kb on - strand at 835.511 kb on - strand, within HP15_817
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 832,450 + HP15_813 0.29 +0.7 832,457 + HP15_813 0.29 +1.4 832,555 + HP15_813 0.38 +0.4 832,829 - HP15_813 0.61 -1.1 832,829 - HP15_813 0.61 -0.4 832,841 + HP15_813 0.62 +0.9 832,849 - HP15_813 0.63 -0.0 832,953 + HP15_813 0.72 -0.4 832,975 + HP15_813 0.74 -0.1 832,975 + HP15_813 0.74 +1.3 833,084 - HP15_813 0.83 +0.0 833,150 + HP15_813 0.89 -0.7 833,150 + HP15_813 0.89 -1.1 833,164 + HP15_813 0.90 +1.9 833,267 + +0.8 833,283 - -0.3 833,293 - +0.2 833,316 - -0.1 833,339 - -1.3 833,391 - +0.1 833,645 + HP15_814 0.27 +1.3 833,669 - HP15_814 0.29 -0.2 833,769 - HP15_814 0.37 -0.2 833,784 - HP15_814 0.38 -0.3 833,820 - HP15_814 0.41 +0.2 833,882 - HP15_814 0.46 +0.9 833,934 - HP15_814 0.50 +0.1 833,993 + HP15_814 0.55 +1.9 834,009 - HP15_814 0.56 +0.4 834,043 + HP15_814 0.59 +0.3 834,229 + HP15_814 0.73 -0.1 834,327 - HP15_814 0.81 +0.4 834,369 + HP15_814 0.85 -0.4 834,389 + HP15_814 0.86 +1.5 834,389 + HP15_814 0.86 +1.3 834,397 - HP15_814 0.87 +0.9 834,402 - HP15_814 0.87 +1.4 834,528 + +0.1 834,563 - +1.4 834,602 - HP15_815 0.16 -0.5 834,934 + HP15_816 0.31 +1.4 834,951 + HP15_816 0.34 -0.7 834,963 + HP15_816 0.36 +1.8 835,045 - HP15_816 0.51 -0.6 835,057 + HP15_816 0.53 +0.5 835,065 - HP15_816 0.54 -0.4 835,119 - HP15_816 0.64 -0.1 835,139 - HP15_816 0.67 -0.2 835,166 + HP15_816 0.72 +1.6 835,431 - +0.6 835,511 - HP15_817 0.15 +0.7
Or see this region's nucleotide sequence