Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07280

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07260 and PGA1_c07270 are separated by 22 nucleotidesPGA1_c07270 and PGA1_c07280 are separated by 11 nucleotidesPGA1_c07280 and PGA1_c07290 are separated by 62 nucleotides PGA1_c07260: PGA1_c07260 - putative inositol 2-dehydrogenase, at 747,173 to 748,378 _c07260 PGA1_c07270: PGA1_c07270 - Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data), at 748,401 to 749,294 _c07270 PGA1_c07280: PGA1_c07280 - putative oxidoreduktase, at 749,306 to 750,463 _c07280 PGA1_c07290: PGA1_c07290 - transcriptional regulator, lacI family, at 750,526 to 751,527 _c07290 Position (kb) 749 750 751Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 748.346 kb on - strandat 748.437 kb on - strandat 748.485 kb on + strandat 748.485 kb on + strandat 748.490 kb on + strandat 748.516 kb on + strand, within PGA1_c07270at 748.521 kb on + strand, within PGA1_c07270at 748.524 kb on - strand, within PGA1_c07270at 748.530 kb on + strand, within PGA1_c07270at 748.570 kb on - strand, within PGA1_c07270at 748.658 kb on - strand, within PGA1_c07270at 748.663 kb on - strand, within PGA1_c07270at 748.837 kb on - strand, within PGA1_c07270at 748.850 kb on - strand, within PGA1_c07270at 749.026 kb on + strand, within PGA1_c07270at 749.034 kb on - strand, within PGA1_c07270at 749.044 kb on - strand, within PGA1_c07270at 749.057 kb on + strand, within PGA1_c07270at 749.065 kb on - strand, within PGA1_c07270at 749.210 kb on - strandat 749.234 kb on - strandat 749.240 kb on + strandat 749.254 kb on - strandat 749.361 kb on - strandat 749.381 kb on + strandat 749.389 kb on - strandat 749.451 kb on - strand, within PGA1_c07280at 749.493 kb on + strand, within PGA1_c07280at 749.503 kb on + strand, within PGA1_c07280at 749.532 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.540 kb on - strand, within PGA1_c07280at 749.542 kb on + strand, within PGA1_c07280at 749.549 kb on + strand, within PGA1_c07280at 749.607 kb on + strand, within PGA1_c07280at 749.640 kb on + strand, within PGA1_c07280at 749.640 kb on + strand, within PGA1_c07280at 749.683 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.692 kb on - strand, within PGA1_c07280at 749.697 kb on - strand, within PGA1_c07280at 749.697 kb on - strand, within PGA1_c07280at 749.697 kb on - strand, within PGA1_c07280at 749.710 kb on - strand, within PGA1_c07280at 749.743 kb on + strand, within PGA1_c07280at 749.743 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.877 kb on - strand, within PGA1_c07280at 749.909 kb on - strand, within PGA1_c07280at 749.920 kb on - strand, within PGA1_c07280at 749.922 kb on - strand, within PGA1_c07280at 749.944 kb on - strand, within PGA1_c07280at 749.961 kb on - strand, within PGA1_c07280at 749.968 kb on + strand, within PGA1_c07280at 749.975 kb on - strand, within PGA1_c07280at 750.003 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.076 kb on - strand, within PGA1_c07280at 750.083 kb on + strand, within PGA1_c07280at 750.083 kb on + strand, within PGA1_c07280at 750.083 kb on + strand, within PGA1_c07280at 750.098 kb on - strand, within PGA1_c07280at 750.098 kb on - strand, within PGA1_c07280at 750.124 kb on - strand, within PGA1_c07280at 750.126 kb on + strand, within PGA1_c07280at 750.161 kb on - strand, within PGA1_c07280at 750.210 kb on + strand, within PGA1_c07280at 750.218 kb on - strand, within PGA1_c07280at 750.280 kb on + strand, within PGA1_c07280at 750.357 kb on - strandat 750.422 kb on + strandat 750.426 kb on + strandat 750.474 kb on + strandat 750.564 kb on - strandat 750.564 kb on - strandat 750.617 kb on + strandat 750.617 kb on + strandat 750.617 kb on + strandat 750.617 kb on + strandat 750.617 kb on + strandat 750.620 kb on - strandat 750.622 kb on + strandat 750.625 kb on - strandat 750.638 kb on - strand, within PGA1_c07290at 750.659 kb on - strand, within PGA1_c07290at 750.663 kb on + strand, within PGA1_c07290at 750.671 kb on - strand, within PGA1_c07290at 750.679 kb on - strand, within PGA1_c07290at 750.686 kb on - strand, within PGA1_c07290at 750.752 kb on - strand, within PGA1_c07290at 750.904 kb on - strand, within PGA1_c07290at 750.929 kb on + strand, within PGA1_c07290at 750.929 kb on + strand, within PGA1_c07290at 750.997 kb on - strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.016 kb on - strand, within PGA1_c07290at 751.016 kb on - strand, within PGA1_c07290at 751.018 kb on + strand, within PGA1_c07290at 751.069 kb on - strand, within PGA1_c07290at 751.160 kb on - strand, within PGA1_c07290at 751.165 kb on - strand, within PGA1_c07290at 751.286 kb on - strand, within PGA1_c07290at 751.302 kb on + strand, within PGA1_c07290at 751.372 kb on + strand, within PGA1_c07290at 751.388 kb on + strand, within PGA1_c07290at 751.390 kb on + strand, within PGA1_c07290at 751.426 kb on - strand, within PGA1_c07290

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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748,346 - +0.9
748,437 - +0.0
748,485 + +1.0
748,485 + +0.4
748,490 + -0.4
748,516 + PGA1_c07270 0.13 +1.0
748,521 + PGA1_c07270 0.13 -1.0
748,524 - PGA1_c07270 0.14 +0.2
748,530 + PGA1_c07270 0.14 +0.2
748,570 - PGA1_c07270 0.19 +0.8
748,658 - PGA1_c07270 0.29 +1.3
748,663 - PGA1_c07270 0.29 +0.2
748,837 - PGA1_c07270 0.49 +0.0
748,850 - PGA1_c07270 0.50 -1.9
749,026 + PGA1_c07270 0.70 -1.7
749,034 - PGA1_c07270 0.71 +1.2
749,044 - PGA1_c07270 0.72 +0.3
749,057 + PGA1_c07270 0.73 +0.7
749,065 - PGA1_c07270 0.74 +1.6
749,210 - -2.6
749,234 - +0.2
749,240 + -0.2
749,254 - +1.3
749,361 - -1.6
749,381 + +0.7
749,389 - -2.4
749,451 - PGA1_c07280 0.13 +0.6
749,493 + PGA1_c07280 0.16 +0.0
749,503 + PGA1_c07280 0.17 +2.0
749,532 + PGA1_c07280 0.20 +0.8
749,537 + PGA1_c07280 0.20 -0.2
749,537 + PGA1_c07280 0.20 -1.6
749,537 + PGA1_c07280 0.20 -0.5
749,537 + PGA1_c07280 0.20 -0.3
749,537 + PGA1_c07280 0.20 -0.8
749,540 - PGA1_c07280 0.20 +0.4
749,542 + PGA1_c07280 0.20 -0.3
749,549 + PGA1_c07280 0.21 +1.5
749,607 + PGA1_c07280 0.26 -1.3
749,640 + PGA1_c07280 0.29 -2.2
749,640 + PGA1_c07280 0.29 +0.4
749,683 + PGA1_c07280 0.33 +0.6
749,689 + PGA1_c07280 0.33 +1.0
749,689 + PGA1_c07280 0.33 -0.7
749,689 + PGA1_c07280 0.33 +0.3
749,689 + PGA1_c07280 0.33 -0.6
749,692 - PGA1_c07280 0.33 +0.6
749,697 - PGA1_c07280 0.34 -0.0
749,697 - PGA1_c07280 0.34 +0.3
749,697 - PGA1_c07280 0.34 +0.8
749,710 - PGA1_c07280 0.35 -1.3
749,743 + PGA1_c07280 0.38 -1.4
749,743 + PGA1_c07280 0.38 +0.6
749,869 + PGA1_c07280 0.49 +0.2
749,869 + PGA1_c07280 0.49 +1.3
749,869 + PGA1_c07280 0.49 -2.6
749,869 + PGA1_c07280 0.49 -1.1
749,877 - PGA1_c07280 0.49 -1.4
749,909 - PGA1_c07280 0.52 -2.0
749,920 - PGA1_c07280 0.53 +1.4
749,922 - PGA1_c07280 0.53 +0.6
749,944 - PGA1_c07280 0.55 +0.9
749,961 - PGA1_c07280 0.57 +0.6
749,968 + PGA1_c07280 0.57 -1.0
749,975 - PGA1_c07280 0.58 +0.3
750,003 + PGA1_c07280 0.60 +0.3
750,046 + PGA1_c07280 0.64 +1.8
750,046 + PGA1_c07280 0.64 +1.0
750,046 + PGA1_c07280 0.64 +0.1
750,046 + PGA1_c07280 0.64 -1.3
750,046 + PGA1_c07280 0.64 -0.3
750,046 + PGA1_c07280 0.64 +0.1
750,046 + PGA1_c07280 0.64 +0.2
750,046 + PGA1_c07280 0.64 -1.5
750,046 + PGA1_c07280 0.64 -0.8
750,054 - PGA1_c07280 0.65 +0.6
750,054 - PGA1_c07280 0.65 +0.4
750,054 - PGA1_c07280 0.65 +1.5
750,054 - PGA1_c07280 0.65 +0.3
750,054 - PGA1_c07280 0.65 +1.4
750,054 - PGA1_c07280 0.65 +2.6
750,054 - PGA1_c07280 0.65 +1.6
750,054 - PGA1_c07280 0.65 -0.4
750,076 - PGA1_c07280 0.66 -1.8
750,083 + PGA1_c07280 0.67 +0.2
750,083 + PGA1_c07280 0.67 +0.7
750,083 + PGA1_c07280 0.67 +0.9
750,098 - PGA1_c07280 0.68 +0.6
750,098 - PGA1_c07280 0.68 +0.3
750,124 - PGA1_c07280 0.71 +1.7
750,126 + PGA1_c07280 0.71 +0.4
750,161 - PGA1_c07280 0.74 +1.8
750,210 + PGA1_c07280 0.78 +0.3
750,218 - PGA1_c07280 0.79 +0.6
750,280 + PGA1_c07280 0.84 +0.8
750,357 - +0.1
750,422 + -0.3
750,426 + +0.8
750,474 + +0.6
750,564 - -1.0
750,564 - +0.6
750,617 + +0.6
750,617 + -1.8
750,617 + +0.1
750,617 + +0.2
750,617 + -2.2
750,620 - -1.1
750,622 + -1.0
750,625 - -0.8
750,638 - PGA1_c07290 0.11 +0.8
750,659 - PGA1_c07290 0.13 +0.2
750,663 + PGA1_c07290 0.14 +1.0
750,671 - PGA1_c07290 0.14 -1.4
750,679 - PGA1_c07290 0.15 -0.3
750,686 - PGA1_c07290 0.16 -0.7
750,752 - PGA1_c07290 0.23 +1.2
750,904 - PGA1_c07290 0.38 -1.2
750,929 + PGA1_c07290 0.40 -2.0
750,929 + PGA1_c07290 0.40 -0.6
750,997 - PGA1_c07290 0.47 +0.2
751,006 + PGA1_c07290 0.48 -1.6
751,006 + PGA1_c07290 0.48 +0.1
751,006 + PGA1_c07290 0.48 +0.4
751,006 + PGA1_c07290 0.48 -0.0
751,006 + PGA1_c07290 0.48 -1.0
751,006 + PGA1_c07290 0.48 -2.0
751,006 + PGA1_c07290 0.48 +0.2
751,006 + PGA1_c07290 0.48 -3.4
751,014 - PGA1_c07290 0.49 -1.0
751,014 - PGA1_c07290 0.49 -1.8
751,014 - PGA1_c07290 0.49 -0.4
751,014 - PGA1_c07290 0.49 -0.7
751,016 - PGA1_c07290 0.49 -0.8
751,016 - PGA1_c07290 0.49 +0.2
751,018 + PGA1_c07290 0.49 -0.8
751,069 - PGA1_c07290 0.54 +0.0
751,160 - PGA1_c07290 0.63 +1.0
751,165 - PGA1_c07290 0.64 -0.7
751,286 - PGA1_c07290 0.76 +0.0
751,302 + PGA1_c07290 0.77 -0.3
751,372 + PGA1_c07290 0.84 -1.9
751,388 + PGA1_c07290 0.86 -0.8
751,390 + PGA1_c07290 0.86 -1.1
751,426 - PGA1_c07290 0.90 -2.9

Or see this region's nucleotide sequence