Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06620 and PGA1_c06630 are separated by 104 nucleotides PGA1_c06630 and PGA1_c06640 are separated by 177 nucleotides PGA1_c06640 and PGA1_c06650 are separated by 178 nucleotides
PGA1_c06620: PGA1_c06620 - putative FAD-dependent hydroxylase, at 679,223 to 680,419
_c06620
PGA1_c06630: PGA1_c06630 - hypothetical protein, at 680,524 to 680,769
_c06630
PGA1_c06640: PGA1_c06640 - putative pyrimidine 5'-nucleotidase, at 680,947 to 681,588
_c06640
PGA1_c06650: PGA1_c06650 - transcriptional regulator, GntR family, at 681,767 to 682,420
_c06650
Position (kb) 680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 680.451 kb on + strand at 680.469 kb on - strand at 680.565 kb on - strand, within PGA1_c06630 at 680.575 kb on - strand, within PGA1_c06630 at 680.624 kb on + strand, within PGA1_c06630 at 680.732 kb on + strand, within PGA1_c06630 at 680.732 kb on + strand, within PGA1_c06630 at 680.732 kb on + strand, within PGA1_c06630 at 680.740 kb on - strand, within PGA1_c06630 at 680.740 kb on - strand, within PGA1_c06630 at 680.779 kb on + strand at 680.787 kb on - strand at 680.787 kb on - strand at 680.788 kb on - strand at 680.803 kb on + strand at 680.827 kb on - strand at 680.945 kb on + strand at 680.953 kb on - strand at 680.967 kb on + strand at 681.034 kb on + strand, within PGA1_c06640 at 681.085 kb on - strand, within PGA1_c06640 at 681.085 kb on - strand, within PGA1_c06640 at 681.101 kb on + strand, within PGA1_c06640 at 681.201 kb on + strand, within PGA1_c06640 at 681.207 kb on - strand, within PGA1_c06640 at 681.209 kb on - strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.226 kb on - strand, within PGA1_c06640 at 681.226 kb on - strand, within PGA1_c06640 at 681.281 kb on + strand, within PGA1_c06640 at 681.281 kb on + strand, within PGA1_c06640 at 681.289 kb on - strand, within PGA1_c06640 at 681.289 kb on - strand, within PGA1_c06640 at 681.381 kb on + strand, within PGA1_c06640 at 681.445 kb on + strand, within PGA1_c06640 at 681.453 kb on - strand, within PGA1_c06640 at 681.522 kb on + strand, within PGA1_c06640 at 681.584 kb on + strand at 681.598 kb on - strand at 681.611 kb on - strand at 681.611 kb on - strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.669 kb on + strand at 681.691 kb on - strand at 681.691 kb on - strand at 681.699 kb on - strand at 681.710 kb on - strand at 681.730 kb on + strand at 681.736 kb on - strand at 681.760 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 680,451 + +0.6 680,469 - +0.1 680,565 - PGA1_c06630 0.17 -0.3 680,575 - PGA1_c06630 0.21 -0.0 680,624 + PGA1_c06630 0.41 +0.4 680,732 + PGA1_c06630 0.85 +0.3 680,732 + PGA1_c06630 0.85 -1.0 680,732 + PGA1_c06630 0.85 -1.0 680,740 - PGA1_c06630 0.88 +0.2 680,740 - PGA1_c06630 0.88 -0.3 680,779 + +1.2 680,787 - +1.9 680,787 - +1.5 680,788 - +2.1 680,803 + +0.1 680,827 - -0.8 680,945 + -0.2 680,953 - -0.6 680,967 + +0.6 681,034 + PGA1_c06640 0.14 +0.2 681,085 - PGA1_c06640 0.21 -0.3 681,085 - PGA1_c06640 0.21 +0.2 681,101 + PGA1_c06640 0.24 -0.8 681,201 + PGA1_c06640 0.40 +0.6 681,207 - PGA1_c06640 0.40 +0.6 681,209 - PGA1_c06640 0.41 -1.4 681,218 + PGA1_c06640 0.42 -0.6 681,218 + PGA1_c06640 0.42 +0.8 681,218 + PGA1_c06640 0.42 +0.3 681,218 + PGA1_c06640 0.42 +1.8 681,226 - PGA1_c06640 0.43 +0.3 681,226 - PGA1_c06640 0.43 -0.4 681,281 + PGA1_c06640 0.52 -3.1 681,281 + PGA1_c06640 0.52 -0.7 681,289 - PGA1_c06640 0.53 +0.2 681,289 - PGA1_c06640 0.53 +1.9 681,381 + PGA1_c06640 0.68 +0.6 681,445 + PGA1_c06640 0.78 -1.6 681,453 - PGA1_c06640 0.79 -1.4 681,522 + PGA1_c06640 0.90 -0.4 681,584 + -0.4 681,598 - +0.1 681,611 - +0.7 681,611 - +0.3 681,637 + +0.3 681,637 + -1.0 681,637 + +0.5 681,637 + +0.3 681,637 + +0.7 681,637 + +1.1 681,645 - +0.3 681,645 - -1.7 681,645 - +1.2 681,645 - +0.8 681,645 - -0.7 681,645 - +0.4 681,669 + -1.2 681,691 - -1.3 681,691 - -0.0 681,699 - +1.8 681,710 - -1.0 681,730 + -0.4 681,736 - +0.5 681,760 - +0.9
Or see this region's nucleotide sequence