Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05720 and PGA1_c05730 are separated by 216 nucleotides PGA1_c05730 and PGA1_c05740 are separated by 228 nucleotides PGA1_c05740 and PGA1_c05750 are separated by 160 nucleotides PGA1_c05750 and PGA1_c05760 are separated by 97 nucleotides
PGA1_c05720: PGA1_c05720 - hypothetical protein, at 587,139 to 587,483
_c05720
PGA1_c05730: PGA1_c05730 - putative methylated-DNA--protein-cysteine methyltransferase, at 587,700 to 588,188
_c05730
PGA1_c05740: PGA1_c05740 - phosphatidylcholine synthase Pcs, at 588,417 to 589,112
_c05740
PGA1_c05750: PGA1_c05750 - hypothetical protein, at 589,273 to 589,614
_c05750
PGA1_c05760: PGA1_c05760 - putative tyrosine recombinase XerC, at 589,712 to 590,647
_c05760
Position (kb) 588
589
590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 587.423 kb on - strand, within PGA1_c05720 at 587.478 kb on - strand at 587.548 kb on + strand at 587.550 kb on + strand at 587.556 kb on - strand at 587.556 kb on - strand at 587.556 kb on - strand at 587.556 kb on - strand at 587.575 kb on + strand at 587.637 kb on + strand at 587.645 kb on - strand at 587.645 kb on - strand at 587.666 kb on - strand at 587.671 kb on - strand at 587.690 kb on + strand at 587.773 kb on - strand, within PGA1_c05730 at 587.783 kb on - strand, within PGA1_c05730 at 588.049 kb on - strand, within PGA1_c05730 at 588.079 kb on + strand, within PGA1_c05730 at 588.203 kb on + strand at 588.216 kb on + strand at 588.224 kb on - strand at 588.234 kb on - strand at 588.391 kb on + strand at 588.423 kb on - strand at 588.485 kb on - strand at 589.098 kb on + strand at 589.200 kb on + strand at 589.227 kb on + strand at 589.245 kb on + strand at 589.294 kb on + strand at 589.326 kb on + strand, within PGA1_c05750 at 589.326 kb on + strand, within PGA1_c05750 at 589.344 kb on + strand, within PGA1_c05750 at 589.369 kb on - strand, within PGA1_c05750 at 589.460 kb on - strand, within PGA1_c05750 at 589.470 kb on - strand, within PGA1_c05750 at 589.470 kb on - strand, within PGA1_c05750 at 589.620 kb on - strand at 589.669 kb on - strand at 589.669 kb on - strand at 589.706 kb on - strand at 589.708 kb on + strand at 589.708 kb on + strand at 589.708 kb on + strand at 589.716 kb on - strand at 589.716 kb on - strand at 589.716 kb on - strand at 589.716 kb on - strand at 589.770 kb on + strand at 589.770 kb on + strand at 589.778 kb on - strand at 589.778 kb on - strand at 589.961 kb on + strand, within PGA1_c05760 at 590.062 kb on - strand, within PGA1_c05760
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 587,423 - PGA1_c05720 0.82 +0.4 587,478 - +0.1 587,548 + +1.6 587,550 + -0.1 587,556 - -0.2 587,556 - -0.3 587,556 - -0.8 587,556 - +0.3 587,575 + -0.1 587,637 + +1.1 587,645 - +0.2 587,645 - -1.9 587,666 - -0.6 587,671 - -1.3 587,690 + -0.3 587,773 - PGA1_c05730 0.15 +0.8 587,783 - PGA1_c05730 0.17 +1.4 588,049 - PGA1_c05730 0.71 -2.4 588,079 + PGA1_c05730 0.78 +0.5 588,203 + +1.6 588,216 + -2.7 588,224 - +0.1 588,234 - -0.0 588,391 + +2.3 588,423 - +0.4 588,485 - -2.4 589,098 + -2.7 589,200 + +0.6 589,227 + +0.3 589,245 + -0.1 589,294 + +0.6 589,326 + PGA1_c05750 0.15 +0.3 589,326 + PGA1_c05750 0.15 -0.0 589,344 + PGA1_c05750 0.21 +1.6 589,369 - PGA1_c05750 0.28 -0.8 589,460 - PGA1_c05750 0.55 +0.9 589,470 - PGA1_c05750 0.58 +0.5 589,470 - PGA1_c05750 0.58 +1.3 589,620 - +0.3 589,669 - -0.3 589,669 - +0.2 589,706 - +1.9 589,708 + +1.4 589,708 + +0.7 589,708 + -0.7 589,716 - -1.6 589,716 - +0.1 589,716 - +2.7 589,716 - -1.3 589,770 + -0.2 589,770 + +0.6 589,778 - -2.4 589,778 - -0.0 589,961 + PGA1_c05760 0.27 -0.9 590,062 - PGA1_c05760 0.37 -0.5
Or see this region's nucleotide sequence