Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g41 and HP15_p187g42 are separated by 26 nucleotides HP15_p187g42 and HP15_p187g43 are separated by 137 nucleotides HP15_p187g43 and HP15_p187g44 are separated by 26 nucleotides
HP15_p187g41: HP15_p187g41 - hypothetical protein, at 34,943 to 35,161
_p187g41
HP15_p187g42: HP15_p187g42 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing-like protein, at 35,188 to 35,697
_p187g42
HP15_p187g43: HP15_p187g43 - conserved hypothetical protein, at 35,835 to 37,220
_p187g43
HP15_p187g44: HP15_p187g44 - polysaccharide biosynthesis/export protein, at 37,247 to 38,368
_p187g44
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.874 kb on + strand at 34.876 kb on + strand at 34.935 kb on + strand at 34.935 kb on + strand at 34.935 kb on + strand at 34.943 kb on - strand at 34.943 kb on - strand at 34.943 kb on - strand at 34.943 kb on - strand at 34.962 kb on - strand at 34.995 kb on - strand, within HP15_p187g41 at 35.000 kb on + strand, within HP15_p187g41 at 35.008 kb on - strand, within HP15_p187g41 at 35.008 kb on - strand, within HP15_p187g41 at 35.008 kb on - strand, within HP15_p187g41 at 35.032 kb on + strand, within HP15_p187g41 at 35.032 kb on + strand, within HP15_p187g41 at 35.042 kb on - strand, within HP15_p187g41 at 35.064 kb on + strand, within HP15_p187g41 at 35.067 kb on + strand, within HP15_p187g41 at 35.067 kb on + strand, within HP15_p187g41 at 35.070 kb on - strand, within HP15_p187g41 at 35.077 kb on - strand, within HP15_p187g41 at 35.216 kb on + strand at 35.273 kb on + strand, within HP15_p187g42 at 35.273 kb on - strand, within HP15_p187g42 at 35.281 kb on - strand, within HP15_p187g42 at 35.281 kb on - strand, within HP15_p187g42 at 35.281 kb on - strand, within HP15_p187g42 at 35.308 kb on + strand, within HP15_p187g42 at 35.342 kb on - strand, within HP15_p187g42 at 35.344 kb on + strand, within HP15_p187g42 at 35.344 kb on + strand, within HP15_p187g42 at 35.362 kb on - strand, within HP15_p187g42 at 35.362 kb on - strand, within HP15_p187g42 at 35.399 kb on + strand, within HP15_p187g42 at 35.422 kb on - strand, within HP15_p187g42 at 35.450 kb on - strand, within HP15_p187g42 at 35.455 kb on - strand, within HP15_p187g42 at 35.488 kb on + strand, within HP15_p187g42 at 35.496 kb on - strand, within HP15_p187g42 at 35.498 kb on + strand, within HP15_p187g42 at 35.500 kb on + strand, within HP15_p187g42 at 35.506 kb on - strand, within HP15_p187g42 at 35.549 kb on + strand, within HP15_p187g42 at 35.562 kb on + strand, within HP15_p187g42 at 35.574 kb on + strand, within HP15_p187g42 at 35.606 kb on + strand, within HP15_p187g42 at 35.644 kb on + strand, within HP15_p187g42 at 35.651 kb on + strand at 35.658 kb on - strand at 35.659 kb on - strand at 35.690 kb on + strand at 35.699 kb on + strand at 35.711 kb on + strand at 35.742 kb on + strand at 35.750 kb on - strand at 35.760 kb on - strand at 35.790 kb on + strand at 35.795 kb on + strand at 35.858 kb on + strand at 35.859 kb on - strand at 35.860 kb on - strand at 35.866 kb on - strand at 35.866 kb on - strand at 35.871 kb on - strand at 35.872 kb on - strand at 35.885 kb on + strand at 35.893 kb on - strand at 35.900 kb on - strand at 35.900 kb on - strand at 35.931 kb on - strand at 35.954 kb on + strand at 36.057 kb on - strand, within HP15_p187g43 at 36.063 kb on + strand, within HP15_p187g43 at 36.117 kb on + strand, within HP15_p187g43 at 36.133 kb on + strand, within HP15_p187g43 at 36.147 kb on + strand, within HP15_p187g43 at 36.182 kb on - strand, within HP15_p187g43 at 36.244 kb on - strand, within HP15_p187g43 at 36.309 kb on + strand, within HP15_p187g43 at 36.309 kb on + strand, within HP15_p187g43 at 36.384 kb on - strand, within HP15_p187g43 at 36.500 kb on + strand, within HP15_p187g43 at 36.508 kb on - strand, within HP15_p187g43 at 36.508 kb on - strand, within HP15_p187g43 at 36.533 kb on + strand, within HP15_p187g43 at 36.561 kb on + strand, within HP15_p187g43 at 36.574 kb on - strand, within HP15_p187g43 at 36.587 kb on + strand, within HP15_p187g43 at 36.641 kb on + strand, within HP15_p187g43 at 36.643 kb on + strand, within HP15_p187g43 at 36.651 kb on - strand, within HP15_p187g43 at 36.651 kb on - strand, within HP15_p187g43 at 36.659 kb on - strand, within HP15_p187g43 at 36.672 kb on - strand, within HP15_p187g43 at 36.672 kb on - strand, within HP15_p187g43 at 36.691 kb on + strand, within HP15_p187g43 at 36.724 kb on + strand, within HP15_p187g43 at 36.753 kb on + strand, within HP15_p187g43 at 36.769 kb on - strand, within HP15_p187g43 at 36.787 kb on - strand, within HP15_p187g43 at 36.836 kb on - strand, within HP15_p187g43 at 36.871 kb on + strand, within HP15_p187g43 at 36.879 kb on - strand, within HP15_p187g43 at 36.879 kb on - strand, within HP15_p187g43 at 36.925 kb on + strand, within HP15_p187g43 at 36.933 kb on - strand, within HP15_p187g43 at 36.969 kb on - strand, within HP15_p187g43 at 36.969 kb on - strand, within HP15_p187g43 at 36.969 kb on - strand, within HP15_p187g43 at 36.995 kb on + strand, within HP15_p187g43 at 36.995 kb on + strand, within HP15_p187g43 at 37.002 kb on + strand, within HP15_p187g43 at 37.003 kb on - strand, within HP15_p187g43 at 37.069 kb on - strand, within HP15_p187g43 at 37.107 kb on - strand at 37.120 kb on + strand at 37.199 kb on + strand at 37.207 kb on - strand at 37.231 kb on - strand at 37.242 kb on - strand at 37.285 kb on + strand at 37.286 kb on + strand at 37.293 kb on - strand at 37.313 kb on - strand at 37.342 kb on + strand at 37.388 kb on - strand, within HP15_p187g44 at 37.435 kb on + strand, within HP15_p187g44 at 37.468 kb on + strand, within HP15_p187g44 at 37.503 kb on + strand, within HP15_p187g44 at 37.539 kb on + strand, within HP15_p187g44 at 37.583 kb on - strand, within HP15_p187g44 at 37.595 kb on + strand, within HP15_p187g44 at 37.596 kb on + strand, within HP15_p187g44 at 37.603 kb on - strand, within HP15_p187g44 at 37.624 kb on - strand, within HP15_p187g44 at 37.624 kb on - strand, within HP15_p187g44 at 37.775 kb on + strand, within HP15_p187g44 at 37.811 kb on - strand, within HP15_p187g44 at 37.875 kb on + strand, within HP15_p187g44 at 37.944 kb on - strand, within HP15_p187g44 at 37.948 kb on + strand, within HP15_p187g44 at 37.959 kb on - strand, within HP15_p187g44 at 37.995 kb on - strand, within HP15_p187g44 at 38.063 kb on + strand, within HP15_p187g44 at 38.063 kb on + strand, within HP15_p187g44 at 38.063 kb on + strand, within HP15_p187g44 at 38.071 kb on - strand, within HP15_p187g44 at 38.072 kb on - strand, within HP15_p187g44 at 38.074 kb on + strand, within HP15_p187g44 at 38.085 kb on + strand, within HP15_p187g44 at 38.093 kb on - strand, within HP15_p187g44 at 38.130 kb on + strand, within HP15_p187g44 at 38.138 kb on + strand, within HP15_p187g44 at 38.181 kb on - strand, within HP15_p187g44 at 38.202 kb on - strand, within HP15_p187g44
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 34,874 + -1.1 34,876 + +0.0 34,935 + +0.2 34,935 + -0.5 34,935 + +0.2 34,943 - -0.9 34,943 - +1.0 34,943 - -0.3 34,943 - -0.1 34,962 - +1.2 34,995 - HP15_p187g41 0.24 +0.2 35,000 + HP15_p187g41 0.26 -0.6 35,008 - HP15_p187g41 0.30 -0.3 35,008 - HP15_p187g41 0.30 -0.6 35,008 - HP15_p187g41 0.30 -0.4 35,032 + HP15_p187g41 0.41 -1.3 35,032 + HP15_p187g41 0.41 -0.3 35,042 - HP15_p187g41 0.45 -0.3 35,064 + HP15_p187g41 0.55 +0.2 35,067 + HP15_p187g41 0.57 -0.2 35,067 + HP15_p187g41 0.57 +0.7 35,070 - HP15_p187g41 0.58 -0.3 35,077 - HP15_p187g41 0.61 +0.0 35,216 + +1.2 35,273 + HP15_p187g42 0.17 +1.2 35,273 - HP15_p187g42 0.17 +1.2 35,281 - HP15_p187g42 0.18 -0.1 35,281 - HP15_p187g42 0.18 -1.3 35,281 - HP15_p187g42 0.18 -0.3 35,308 + HP15_p187g42 0.24 +1.1 35,342 - HP15_p187g42 0.30 -0.3 35,344 + HP15_p187g42 0.31 +0.9 35,344 + HP15_p187g42 0.31 +1.3 35,362 - HP15_p187g42 0.34 -1.1 35,362 - HP15_p187g42 0.34 -0.3 35,399 + HP15_p187g42 0.41 +0.2 35,422 - HP15_p187g42 0.46 -2.1 35,450 - HP15_p187g42 0.51 +0.2 35,455 - HP15_p187g42 0.52 -0.8 35,488 + HP15_p187g42 0.59 +1.0 35,496 - HP15_p187g42 0.60 +1.3 35,498 + HP15_p187g42 0.61 -0.8 35,500 + HP15_p187g42 0.61 -0.6 35,506 - HP15_p187g42 0.62 -0.3 35,549 + HP15_p187g42 0.71 +1.4 35,562 + HP15_p187g42 0.73 -0.7 35,574 + HP15_p187g42 0.76 -1.3 35,606 + HP15_p187g42 0.82 +0.4 35,644 + HP15_p187g42 0.89 +0.5 35,651 + +0.7 35,658 - -0.5 35,659 - -1.9 35,690 + -1.5 35,699 + -0.7 35,711 + +0.2 35,742 + -0.3 35,750 - +0.8 35,760 - +0.6 35,790 + -0.4 35,795 + -0.1 35,858 + -0.7 35,859 - -0.3 35,860 - -0.8 35,866 - +1.0 35,866 - -0.4 35,871 - +0.5 35,872 - -0.6 35,885 + -0.7 35,893 - +1.2 35,900 - +0.8 35,900 - +1.4 35,931 - -0.5 35,954 + +0.2 36,057 - HP15_p187g43 0.16 +0.5 36,063 + HP15_p187g43 0.16 -0.6 36,117 + HP15_p187g43 0.20 -0.1 36,133 + HP15_p187g43 0.22 +0.2 36,147 + HP15_p187g43 0.23 -1.4 36,182 - HP15_p187g43 0.25 +0.1 36,244 - HP15_p187g43 0.30 +0.2 36,309 + HP15_p187g43 0.34 -1.0 36,309 + HP15_p187g43 0.34 -1.3 36,384 - HP15_p187g43 0.40 -0.1 36,500 + HP15_p187g43 0.48 -0.6 36,508 - HP15_p187g43 0.49 +0.5 36,508 - HP15_p187g43 0.49 +1.4 36,533 + HP15_p187g43 0.50 +0.2 36,561 + HP15_p187g43 0.52 -1.3 36,574 - HP15_p187g43 0.53 -0.1 36,587 + HP15_p187g43 0.54 -0.8 36,641 + HP15_p187g43 0.58 -0.1 36,643 + HP15_p187g43 0.58 +0.2 36,651 - HP15_p187g43 0.59 +1.4 36,651 - HP15_p187g43 0.59 +0.7 36,659 - HP15_p187g43 0.59 -1.8 36,672 - HP15_p187g43 0.60 -0.2 36,672 - HP15_p187g43 0.60 -1.6 36,691 + HP15_p187g43 0.62 -0.2 36,724 + HP15_p187g43 0.64 -0.4 36,753 + HP15_p187g43 0.66 +1.1 36,769 - HP15_p187g43 0.67 -2.3 36,787 - HP15_p187g43 0.69 -1.5 36,836 - HP15_p187g43 0.72 +1.5 36,871 + HP15_p187g43 0.75 -0.5 36,879 - HP15_p187g43 0.75 +0.8 36,879 - HP15_p187g43 0.75 -0.8 36,925 + HP15_p187g43 0.79 -2.1 36,933 - HP15_p187g43 0.79 +0.9 36,969 - HP15_p187g43 0.82 -1.3 36,969 - HP15_p187g43 0.82 -0.5 36,969 - HP15_p187g43 0.82 +2.0 36,995 + HP15_p187g43 0.84 +1.9 36,995 + HP15_p187g43 0.84 -1.2 37,002 + HP15_p187g43 0.84 +1.5 37,003 - HP15_p187g43 0.84 -0.5 37,069 - HP15_p187g43 0.89 -0.7 37,107 - +0.5 37,120 + -2.6 37,199 + -0.6 37,207 - -1.9 37,231 - +0.4 37,242 - +0.9 37,285 + -0.3 37,286 + +0.7 37,293 - +1.4 37,313 - -1.0 37,342 + -0.2 37,388 - HP15_p187g44 0.13 +1.5 37,435 + HP15_p187g44 0.17 +0.2 37,468 + HP15_p187g44 0.20 +0.7 37,503 + HP15_p187g44 0.23 +0.6 37,539 + HP15_p187g44 0.26 +0.5 37,583 - HP15_p187g44 0.30 -1.9 37,595 + HP15_p187g44 0.31 -0.0 37,596 + HP15_p187g44 0.31 +1.5 37,603 - HP15_p187g44 0.32 -1.3 37,624 - HP15_p187g44 0.34 -1.1 37,624 - HP15_p187g44 0.34 +0.2 37,775 + HP15_p187g44 0.47 +1.2 37,811 - HP15_p187g44 0.50 +0.1 37,875 + HP15_p187g44 0.56 -0.6 37,944 - HP15_p187g44 0.62 -0.6 37,948 + HP15_p187g44 0.62 +0.2 37,959 - HP15_p187g44 0.63 -1.1 37,995 - HP15_p187g44 0.67 -0.8 38,063 + HP15_p187g44 0.73 -0.1 38,063 + HP15_p187g44 0.73 +0.5 38,063 + HP15_p187g44 0.73 -0.5 38,071 - HP15_p187g44 0.73 +1.7 38,072 - HP15_p187g44 0.74 +1.5 38,074 + HP15_p187g44 0.74 -0.1 38,085 + HP15_p187g44 0.75 +0.0 38,093 - HP15_p187g44 0.75 -2.9 38,130 + HP15_p187g44 0.79 -0.5 38,138 + HP15_p187g44 0.79 +0.2 38,181 - HP15_p187g44 0.83 -0.8 38,202 - HP15_p187g44 0.85 -0.7
Or see this region's nucleotide sequence