Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4152 and HP15_4153 are separated by 94 nucleotides HP15_4153 and HP15_4154 are separated by 78 nucleotides HP15_4154 and HP15_4155 overlap by 23 nucleotides HP15_4155 and HP15_4156 are separated by 92 nucleotides
HP15_4152: HP15_4152 - conserved hypothetical protein, at 4,389,172 to 4,389,951
_4152
HP15_4153: HP15_4153 - hypothetical protein, at 4,390,046 to 4,390,633
_4153
HP15_4154: HP15_4154 - glycosyl transferase family protein, at 4,390,712 to 4,391,338
_4154
HP15_4155: HP15_4155 - hypothetical protein, at 4,391,316 to 4,391,984
_4155
HP15_4156: HP15_4156 - conserved hypothetical protein, at 4,392,077 to 4,392,934
_4156
Position (kb)
4390
4391
4392 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4389.735 kb on - strand, within HP15_4152 at 4389.735 kb on - strand, within HP15_4152 at 4389.738 kb on - strand, within HP15_4152 at 4389.760 kb on - strand, within HP15_4152 at 4389.940 kb on + strand at 4389.948 kb on - strand at 4389.948 kb on - strand at 4389.953 kb on - strand at 4389.953 kb on - strand at 4389.953 kb on - strand at 4389.971 kb on + strand at 4390.021 kb on + strand at 4390.180 kb on - strand, within HP15_4153 at 4390.197 kb on + strand, within HP15_4153 at 4390.242 kb on + strand, within HP15_4153 at 4390.344 kb on + strand, within HP15_4153 at 4390.344 kb on + strand, within HP15_4153 at 4390.359 kb on + strand, within HP15_4153 at 4390.359 kb on + strand, within HP15_4153 at 4390.367 kb on - strand, within HP15_4153 at 4390.397 kb on - strand, within HP15_4153 at 4390.401 kb on + strand, within HP15_4153 at 4390.409 kb on - strand, within HP15_4153 at 4390.409 kb on - strand, within HP15_4153 at 4390.421 kb on + strand, within HP15_4153 at 4390.425 kb on - strand, within HP15_4153 at 4390.437 kb on - strand, within HP15_4153 at 4390.456 kb on + strand, within HP15_4153 at 4390.464 kb on - strand, within HP15_4153 at 4390.555 kb on - strand, within HP15_4153 at 4390.634 kb on - strand at 4390.634 kb on - strand at 4390.634 kb on - strand at 4390.639 kb on + strand at 4390.641 kb on - strand at 4390.772 kb on - strand at 4390.859 kb on + strand, within HP15_4154 at 4390.867 kb on + strand, within HP15_4154 at 4390.891 kb on + strand, within HP15_4154 at 4390.891 kb on + strand, within HP15_4154 at 4390.891 kb on + strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.936 kb on - strand, within HP15_4154 at 4390.955 kb on + strand, within HP15_4154 at 4390.957 kb on + strand, within HP15_4154 at 4390.957 kb on - strand, within HP15_4154 at 4390.976 kb on - strand, within HP15_4154 at 4390.980 kb on + strand, within HP15_4154 at 4391.035 kb on + strand, within HP15_4154 at 4391.053 kb on + strand, within HP15_4154 at 4391.061 kb on - strand, within HP15_4154 at 4391.219 kb on - strand, within HP15_4154 at 4391.288 kb on - strand at 4391.288 kb on - strand at 4391.305 kb on - strand at 4391.314 kb on + strand at 4391.323 kb on - strand at 4391.411 kb on + strand, within HP15_4155 at 4391.679 kb on - strand, within HP15_4155 at 4391.696 kb on - strand, within HP15_4155 at 4391.755 kb on - strand, within HP15_4155 at 4391.847 kb on - strand, within HP15_4155 at 4391.851 kb on + strand, within HP15_4155 at 4391.859 kb on - strand, within HP15_4155 at 4391.923 kb on + strand at 4392.047 kb on - strand at 4392.172 kb on - strand, within HP15_4156 at 4392.316 kb on - strand, within HP15_4156 at 4392.316 kb on - strand, within HP15_4156 at 4392.316 kb on - strand, within HP15_4156
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 4,389,735 - HP15_4152 0.72 -1.4 4,389,735 - HP15_4152 0.72 +0.0 4,389,738 - HP15_4152 0.73 +1.5 4,389,760 - HP15_4152 0.75 +0.3 4,389,940 + -0.6 4,389,948 - +1.5 4,389,948 - -0.8 4,389,953 - +3.8 4,389,953 - +0.5 4,389,953 - +0.9 4,389,971 + -0.3 4,390,021 + +0.0 4,390,180 - HP15_4153 0.23 -0.1 4,390,197 + HP15_4153 0.26 -1.1 4,390,242 + HP15_4153 0.33 +0.2 4,390,344 + HP15_4153 0.51 -0.2 4,390,344 + HP15_4153 0.51 +1.5 4,390,359 + HP15_4153 0.53 +1.5 4,390,359 + HP15_4153 0.53 +1.4 4,390,367 - HP15_4153 0.55 +0.0 4,390,397 - HP15_4153 0.60 +1.1 4,390,401 + HP15_4153 0.60 -0.5 4,390,409 - HP15_4153 0.62 +0.2 4,390,409 - HP15_4153 0.62 -0.1 4,390,421 + HP15_4153 0.64 +1.5 4,390,425 - HP15_4153 0.64 +1.4 4,390,437 - HP15_4153 0.66 -0.6 4,390,456 + HP15_4153 0.70 -0.4 4,390,464 - HP15_4153 0.71 +1.4 4,390,555 - HP15_4153 0.87 +0.8 4,390,634 - -0.8 4,390,634 - +0.4 4,390,634 - +0.8 4,390,639 + -1.3 4,390,641 - -0.1 4,390,772 - -1.8 4,390,859 + HP15_4154 0.23 +1.6 4,390,867 + HP15_4154 0.25 +0.8 4,390,891 + HP15_4154 0.29 +2.1 4,390,891 + HP15_4154 0.29 -0.2 4,390,891 + HP15_4154 0.29 +1.5 4,390,899 - HP15_4154 0.30 +2.1 4,390,899 - HP15_4154 0.30 -0.4 4,390,899 - HP15_4154 0.30 +0.2 4,390,899 - HP15_4154 0.30 +1.6 4,390,899 - HP15_4154 0.30 +1.6 4,390,899 - HP15_4154 0.30 +1.6 4,390,899 - HP15_4154 0.30 +1.0 4,390,899 - HP15_4154 0.30 +0.3 4,390,899 - HP15_4154 0.30 -0.3 4,390,899 - HP15_4154 0.30 +1.4 4,390,936 - HP15_4154 0.36 +2.2 4,390,955 + HP15_4154 0.39 +0.1 4,390,957 + HP15_4154 0.39 +1.3 4,390,957 - HP15_4154 0.39 -1.4 4,390,976 - HP15_4154 0.42 -1.4 4,390,980 + HP15_4154 0.43 +1.7 4,391,035 + HP15_4154 0.52 +0.2 4,391,053 + HP15_4154 0.54 +0.8 4,391,061 - HP15_4154 0.56 +0.1 4,391,219 - HP15_4154 0.81 -0.4 4,391,288 - -0.5 4,391,288 - -1.0 4,391,305 - -0.2 4,391,314 + +0.6 4,391,323 - -0.8 4,391,411 + HP15_4155 0.14 +1.3 4,391,679 - HP15_4155 0.54 -0.1 4,391,696 - HP15_4155 0.57 +1.0 4,391,755 - HP15_4155 0.66 +0.5 4,391,847 - HP15_4155 0.79 +1.3 4,391,851 + HP15_4155 0.80 -0.4 4,391,859 - HP15_4155 0.81 -0.7 4,391,923 + +1.2 4,392,047 - +2.3 4,392,172 - HP15_4156 0.11 -1.2 4,392,316 - HP15_4156 0.28 +1.2 4,392,316 - HP15_4156 0.28 +1.4 4,392,316 - HP15_4156 0.28 -0.9
Or see this region's nucleotide sequence