Strain Fitness in Marinobacter adhaerens HP15 around HP15_4154

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4152 and HP15_4153 are separated by 94 nucleotidesHP15_4153 and HP15_4154 are separated by 78 nucleotidesHP15_4154 and HP15_4155 overlap by 23 nucleotidesHP15_4155 and HP15_4156 are separated by 92 nucleotides HP15_4152: HP15_4152 - conserved hypothetical protein, at 4,389,172 to 4,389,951 _4152 HP15_4153: HP15_4153 - hypothetical protein, at 4,390,046 to 4,390,633 _4153 HP15_4154: HP15_4154 - glycosyl transferase family protein, at 4,390,712 to 4,391,338 _4154 HP15_4155: HP15_4155 - hypothetical protein, at 4,391,316 to 4,391,984 _4155 HP15_4156: HP15_4156 - conserved hypothetical protein, at 4,392,077 to 4,392,934 _4156 Position (kb) 4390 4391 4392Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4389.735 kb on - strand, within HP15_4152at 4389.735 kb on - strand, within HP15_4152at 4389.738 kb on - strand, within HP15_4152at 4389.760 kb on - strand, within HP15_4152at 4389.940 kb on + strandat 4389.948 kb on - strandat 4389.948 kb on - strandat 4389.953 kb on - strandat 4389.953 kb on - strandat 4389.953 kb on - strandat 4389.971 kb on + strandat 4390.021 kb on + strandat 4390.180 kb on - strand, within HP15_4153at 4390.197 kb on + strand, within HP15_4153at 4390.242 kb on + strand, within HP15_4153at 4390.344 kb on + strand, within HP15_4153at 4390.344 kb on + strand, within HP15_4153at 4390.359 kb on + strand, within HP15_4153at 4390.359 kb on + strand, within HP15_4153at 4390.367 kb on - strand, within HP15_4153at 4390.397 kb on - strand, within HP15_4153at 4390.401 kb on + strand, within HP15_4153at 4390.409 kb on - strand, within HP15_4153at 4390.409 kb on - strand, within HP15_4153at 4390.421 kb on + strand, within HP15_4153at 4390.425 kb on - strand, within HP15_4153at 4390.437 kb on - strand, within HP15_4153at 4390.456 kb on + strand, within HP15_4153at 4390.464 kb on - strand, within HP15_4153at 4390.555 kb on - strand, within HP15_4153at 4390.634 kb on - strandat 4390.634 kb on - strandat 4390.634 kb on - strandat 4390.639 kb on + strandat 4390.641 kb on - strandat 4390.772 kb on - strandat 4390.859 kb on + strand, within HP15_4154at 4390.867 kb on + strand, within HP15_4154at 4390.891 kb on + strand, within HP15_4154at 4390.891 kb on + strand, within HP15_4154at 4390.891 kb on + strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.936 kb on - strand, within HP15_4154at 4390.955 kb on + strand, within HP15_4154at 4390.957 kb on + strand, within HP15_4154at 4390.957 kb on - strand, within HP15_4154at 4390.976 kb on - strand, within HP15_4154at 4390.980 kb on + strand, within HP15_4154at 4391.035 kb on + strand, within HP15_4154at 4391.053 kb on + strand, within HP15_4154at 4391.061 kb on - strand, within HP15_4154at 4391.219 kb on - strand, within HP15_4154at 4391.288 kb on - strandat 4391.288 kb on - strandat 4391.305 kb on - strandat 4391.314 kb on + strandat 4391.323 kb on - strandat 4391.411 kb on + strand, within HP15_4155at 4391.679 kb on - strand, within HP15_4155at 4391.696 kb on - strand, within HP15_4155at 4391.755 kb on - strand, within HP15_4155at 4391.847 kb on - strand, within HP15_4155at 4391.851 kb on + strand, within HP15_4155at 4391.859 kb on - strand, within HP15_4155at 4391.923 kb on + strandat 4392.047 kb on - strandat 4392.172 kb on - strand, within HP15_4156at 4392.316 kb on - strand, within HP15_4156at 4392.316 kb on - strand, within HP15_4156at 4392.316 kb on - strand, within HP15_4156

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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4,389,735 - HP15_4152 0.72 -1.4
4,389,735 - HP15_4152 0.72 +0.0
4,389,738 - HP15_4152 0.73 +1.5
4,389,760 - HP15_4152 0.75 +0.3
4,389,940 + -0.6
4,389,948 - +1.5
4,389,948 - -0.8
4,389,953 - +3.8
4,389,953 - +0.5
4,389,953 - +0.9
4,389,971 + -0.3
4,390,021 + +0.0
4,390,180 - HP15_4153 0.23 -0.1
4,390,197 + HP15_4153 0.26 -1.1
4,390,242 + HP15_4153 0.33 +0.2
4,390,344 + HP15_4153 0.51 -0.2
4,390,344 + HP15_4153 0.51 +1.5
4,390,359 + HP15_4153 0.53 +1.5
4,390,359 + HP15_4153 0.53 +1.4
4,390,367 - HP15_4153 0.55 +0.0
4,390,397 - HP15_4153 0.60 +1.1
4,390,401 + HP15_4153 0.60 -0.5
4,390,409 - HP15_4153 0.62 +0.2
4,390,409 - HP15_4153 0.62 -0.1
4,390,421 + HP15_4153 0.64 +1.5
4,390,425 - HP15_4153 0.64 +1.4
4,390,437 - HP15_4153 0.66 -0.6
4,390,456 + HP15_4153 0.70 -0.4
4,390,464 - HP15_4153 0.71 +1.4
4,390,555 - HP15_4153 0.87 +0.8
4,390,634 - -0.8
4,390,634 - +0.4
4,390,634 - +0.8
4,390,639 + -1.3
4,390,641 - -0.1
4,390,772 - -1.8
4,390,859 + HP15_4154 0.23 +1.6
4,390,867 + HP15_4154 0.25 +0.8
4,390,891 + HP15_4154 0.29 +2.1
4,390,891 + HP15_4154 0.29 -0.2
4,390,891 + HP15_4154 0.29 +1.5
4,390,899 - HP15_4154 0.30 +2.1
4,390,899 - HP15_4154 0.30 -0.4
4,390,899 - HP15_4154 0.30 +0.2
4,390,899 - HP15_4154 0.30 +1.6
4,390,899 - HP15_4154 0.30 +1.6
4,390,899 - HP15_4154 0.30 +1.6
4,390,899 - HP15_4154 0.30 +1.0
4,390,899 - HP15_4154 0.30 +0.3
4,390,899 - HP15_4154 0.30 -0.3
4,390,899 - HP15_4154 0.30 +1.4
4,390,936 - HP15_4154 0.36 +2.2
4,390,955 + HP15_4154 0.39 +0.1
4,390,957 + HP15_4154 0.39 +1.3
4,390,957 - HP15_4154 0.39 -1.4
4,390,976 - HP15_4154 0.42 -1.4
4,390,980 + HP15_4154 0.43 +1.7
4,391,035 + HP15_4154 0.52 +0.2
4,391,053 + HP15_4154 0.54 +0.8
4,391,061 - HP15_4154 0.56 +0.1
4,391,219 - HP15_4154 0.81 -0.4
4,391,288 - -0.5
4,391,288 - -1.0
4,391,305 - -0.2
4,391,314 + +0.6
4,391,323 - -0.8
4,391,411 + HP15_4155 0.14 +1.3
4,391,679 - HP15_4155 0.54 -0.1
4,391,696 - HP15_4155 0.57 +1.0
4,391,755 - HP15_4155 0.66 +0.5
4,391,847 - HP15_4155 0.79 +1.3
4,391,851 + HP15_4155 0.80 -0.4
4,391,859 - HP15_4155 0.81 -0.7
4,391,923 + +1.2
4,392,047 - +2.3
4,392,172 - HP15_4156 0.11 -1.2
4,392,316 - HP15_4156 0.28 +1.2
4,392,316 - HP15_4156 0.28 +1.4
4,392,316 - HP15_4156 0.28 -0.9

Or see this region's nucleotide sequence