Strain Fitness in Marinobacter adhaerens HP15 around HP15_3915

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3914 and HP15_3915 are separated by 110 nucleotidesHP15_3915 and HP15_3916 are separated by 166 nucleotides HP15_3914: HP15_3914 - carboxylate/amino acid/amine transporter, at 4,142,972 to 4,143,856 _3914 HP15_3915: HP15_3915 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 4,143,967 to 4,145,583 _3915 HP15_3916: HP15_3916 - sodium-dependent transporter family protein, at 4,145,750 to 4,147,147 _3916 Position (kb) 4143 4144 4145 4146Strain fitness (log2 ratio) -1 0 1 2at 4143.099 kb on + strand, within HP15_3914at 4143.154 kb on - strand, within HP15_3914at 4143.207 kb on - strand, within HP15_3914at 4143.234 kb on + strand, within HP15_3914at 4143.242 kb on + strand, within HP15_3914at 4143.273 kb on + strand, within HP15_3914at 4143.281 kb on - strand, within HP15_3914at 4143.480 kb on - strand, within HP15_3914at 4143.593 kb on - strand, within HP15_3914at 4143.627 kb on + strand, within HP15_3914at 4143.868 kb on + strandat 4143.868 kb on + strandat 4143.876 kb on - strandat 4143.876 kb on - strandat 4143.989 kb on - strandat 4144.025 kb on + strandat 4144.089 kb on - strandat 4144.197 kb on + strand, within HP15_3915at 4144.231 kb on - strand, within HP15_3915at 4144.238 kb on - strand, within HP15_3915at 4144.240 kb on + strand, within HP15_3915at 4144.248 kb on - strand, within HP15_3915at 4144.248 kb on - strand, within HP15_3915at 4144.281 kb on + strand, within HP15_3915at 4144.364 kb on + strand, within HP15_3915at 4144.504 kb on - strand, within HP15_3915at 4144.538 kb on + strand, within HP15_3915at 4144.565 kb on + strand, within HP15_3915at 4145.011 kb on + strand, within HP15_3915at 4145.162 kb on + strand, within HP15_3915at 4145.281 kb on + strand, within HP15_3915at 4145.313 kb on - strand, within HP15_3915at 4145.360 kb on + strand, within HP15_3915at 4145.365 kb on + strand, within HP15_3915at 4145.754 kb on - strandat 4145.882 kb on - strandat 4146.128 kb on - strand, within HP15_3916at 4146.224 kb on - strand, within HP15_3916at 4146.304 kb on + strand, within HP15_3916at 4146.440 kb on + strand, within HP15_3916at 4146.472 kb on - strand, within HP15_3916at 4146.507 kb on + strand, within HP15_3916

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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4,143,099 + HP15_3914 0.14 +0.8
4,143,154 - HP15_3914 0.21 +0.3
4,143,207 - HP15_3914 0.27 +0.6
4,143,234 + HP15_3914 0.30 -0.7
4,143,242 + HP15_3914 0.31 +1.5
4,143,273 + HP15_3914 0.34 -0.0
4,143,281 - HP15_3914 0.35 +1.8
4,143,480 - HP15_3914 0.57 -0.7
4,143,593 - HP15_3914 0.70 +1.3
4,143,627 + HP15_3914 0.74 +0.7
4,143,868 + +0.0
4,143,868 + -0.8
4,143,876 - -0.3
4,143,876 - -0.7
4,143,989 - -0.0
4,144,025 + -0.6
4,144,089 - +1.9
4,144,197 + HP15_3915 0.14 +0.9
4,144,231 - HP15_3915 0.16 +1.5
4,144,238 - HP15_3915 0.17 +1.0
4,144,240 + HP15_3915 0.17 +0.3
4,144,248 - HP15_3915 0.17 +0.6
4,144,248 - HP15_3915 0.17 +0.7
4,144,281 + HP15_3915 0.19 +1.1
4,144,364 + HP15_3915 0.25 +0.8
4,144,504 - HP15_3915 0.33 +0.3
4,144,538 + HP15_3915 0.35 +0.3
4,144,565 + HP15_3915 0.37 +0.0
4,145,011 + HP15_3915 0.65 -0.1
4,145,162 + HP15_3915 0.74 -0.3
4,145,281 + HP15_3915 0.81 +1.2
4,145,313 - HP15_3915 0.83 +1.0
4,145,360 + HP15_3915 0.86 +0.9
4,145,365 + HP15_3915 0.86 +1.2
4,145,754 - -1.1
4,145,882 - +0.9
4,146,128 - HP15_3916 0.27 +1.0
4,146,224 - HP15_3916 0.34 +1.0
4,146,304 + HP15_3916 0.40 -0.2
4,146,440 + HP15_3916 0.49 -0.6
4,146,472 - HP15_3916 0.52 -0.0
4,146,507 + HP15_3916 0.54 -0.3

Or see this region's nucleotide sequence