Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3914 and HP15_3915 are separated by 110 nucleotides HP15_3915 and HP15_3916 are separated by 166 nucleotides
HP15_3914: HP15_3914 - carboxylate/amino acid/amine transporter, at 4,142,972 to 4,143,856
_3914
HP15_3915: HP15_3915 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 4,143,967 to 4,145,583
_3915
HP15_3916: HP15_3916 - sodium-dependent transporter family protein, at 4,145,750 to 4,147,147
_3916
Position (kb)
4143
4144
4145
4146 Strain fitness (log2 ratio)
-1
0
1
2 at 4143.099 kb on + strand, within HP15_3914 at 4143.154 kb on - strand, within HP15_3914 at 4143.207 kb on - strand, within HP15_3914 at 4143.234 kb on + strand, within HP15_3914 at 4143.242 kb on + strand, within HP15_3914 at 4143.273 kb on + strand, within HP15_3914 at 4143.281 kb on - strand, within HP15_3914 at 4143.480 kb on - strand, within HP15_3914 at 4143.593 kb on - strand, within HP15_3914 at 4143.627 kb on + strand, within HP15_3914 at 4143.868 kb on + strand at 4143.868 kb on + strand at 4143.876 kb on - strand at 4143.876 kb on - strand at 4143.989 kb on - strand at 4144.025 kb on + strand at 4144.089 kb on - strand at 4144.197 kb on + strand, within HP15_3915 at 4144.231 kb on - strand, within HP15_3915 at 4144.238 kb on - strand, within HP15_3915 at 4144.240 kb on + strand, within HP15_3915 at 4144.248 kb on - strand, within HP15_3915 at 4144.248 kb on - strand, within HP15_3915 at 4144.281 kb on + strand, within HP15_3915 at 4144.364 kb on + strand, within HP15_3915 at 4144.504 kb on - strand, within HP15_3915 at 4144.538 kb on + strand, within HP15_3915 at 4144.565 kb on + strand, within HP15_3915 at 4145.011 kb on + strand, within HP15_3915 at 4145.162 kb on + strand, within HP15_3915 at 4145.281 kb on + strand, within HP15_3915 at 4145.313 kb on - strand, within HP15_3915 at 4145.360 kb on + strand, within HP15_3915 at 4145.365 kb on + strand, within HP15_3915 at 4145.754 kb on - strand at 4145.882 kb on - strand at 4146.128 kb on - strand, within HP15_3916 at 4146.224 kb on - strand, within HP15_3916 at 4146.304 kb on + strand, within HP15_3916 at 4146.440 kb on + strand, within HP15_3916 at 4146.472 kb on - strand, within HP15_3916 at 4146.507 kb on + strand, within HP15_3916
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 4,143,099 + HP15_3914 0.14 +0.8 4,143,154 - HP15_3914 0.21 +0.3 4,143,207 - HP15_3914 0.27 +0.6 4,143,234 + HP15_3914 0.30 -0.7 4,143,242 + HP15_3914 0.31 +1.5 4,143,273 + HP15_3914 0.34 -0.0 4,143,281 - HP15_3914 0.35 +1.8 4,143,480 - HP15_3914 0.57 -0.7 4,143,593 - HP15_3914 0.70 +1.3 4,143,627 + HP15_3914 0.74 +0.7 4,143,868 + +0.0 4,143,868 + -0.8 4,143,876 - -0.3 4,143,876 - -0.7 4,143,989 - -0.0 4,144,025 + -0.6 4,144,089 - +1.9 4,144,197 + HP15_3915 0.14 +0.9 4,144,231 - HP15_3915 0.16 +1.5 4,144,238 - HP15_3915 0.17 +1.0 4,144,240 + HP15_3915 0.17 +0.3 4,144,248 - HP15_3915 0.17 +0.6 4,144,248 - HP15_3915 0.17 +0.7 4,144,281 + HP15_3915 0.19 +1.1 4,144,364 + HP15_3915 0.25 +0.8 4,144,504 - HP15_3915 0.33 +0.3 4,144,538 + HP15_3915 0.35 +0.3 4,144,565 + HP15_3915 0.37 +0.0 4,145,011 + HP15_3915 0.65 -0.1 4,145,162 + HP15_3915 0.74 -0.3 4,145,281 + HP15_3915 0.81 +1.2 4,145,313 - HP15_3915 0.83 +1.0 4,145,360 + HP15_3915 0.86 +0.9 4,145,365 + HP15_3915 0.86 +1.2 4,145,754 - -1.1 4,145,882 - +0.9 4,146,128 - HP15_3916 0.27 +1.0 4,146,224 - HP15_3916 0.34 +1.0 4,146,304 + HP15_3916 0.40 -0.2 4,146,440 + HP15_3916 0.49 -0.6 4,146,472 - HP15_3916 0.52 -0.0 4,146,507 + HP15_3916 0.54 -0.3
Or see this region's nucleotide sequence