Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3896 and HP15_3897 are separated by 76 nucleotides HP15_3897 and HP15_3898 are separated by 49 nucleotides
HP15_3896: HP15_3896 - hypothetical protein putative signal peptide-like protein, at 4,126,761 to 4,127,879
_3896
HP15_3897: HP15_3897 - conserved hypothetical protein, at 4,127,956 to 4,128,156
_3897
HP15_3898: HP15_3898 - conserved hypothetical protein, secreted, at 4,128,206 to 4,129,690
_3898
Position (kb) 4127
4128
4129 Strain fitness (log2 ratio) -1
0
1
2 at 4127.020 kb on - strand, within HP15_3896 at 4127.032 kb on - strand, within HP15_3896 at 4127.056 kb on + strand, within HP15_3896 at 4127.211 kb on + strand, within HP15_3896 at 4127.244 kb on + strand, within HP15_3896 at 4127.249 kb on + strand, within HP15_3896 at 4127.257 kb on - strand, within HP15_3896 at 4127.295 kb on - strand, within HP15_3896 at 4127.380 kb on + strand, within HP15_3896 at 4127.385 kb on + strand, within HP15_3896 at 4127.424 kb on + strand, within HP15_3896 at 4127.502 kb on + strand, within HP15_3896 at 4127.510 kb on - strand, within HP15_3896 at 4127.593 kb on + strand, within HP15_3896 at 4127.603 kb on + strand, within HP15_3896 at 4127.611 kb on - strand, within HP15_3896 at 4127.611 kb on - strand, within HP15_3896 at 4127.617 kb on + strand, within HP15_3896 at 4127.659 kb on + strand, within HP15_3896 at 4127.701 kb on + strand, within HP15_3896 at 4127.701 kb on + strand, within HP15_3896 at 4127.701 kb on + strand, within HP15_3896 at 4127.703 kb on - strand, within HP15_3896 at 4127.709 kb on - strand, within HP15_3896 at 4127.709 kb on - strand, within HP15_3896 at 4127.733 kb on + strand, within HP15_3896 at 4127.733 kb on + strand, within HP15_3896 at 4127.752 kb on - strand, within HP15_3896 at 4127.812 kb on + strand at 4127.812 kb on + strand at 4127.820 kb on - strand at 4127.820 kb on - strand at 4127.987 kb on - strand, within HP15_3897 at 4127.989 kb on + strand, within HP15_3897 at 4128.370 kb on + strand, within HP15_3898 at 4128.751 kb on + strand, within HP15_3898 at 4128.755 kb on + strand, within HP15_3898 at 4128.775 kb on - strand, within HP15_3898 at 4128.797 kb on + strand, within HP15_3898 at 4128.842 kb on + strand, within HP15_3898 at 4128.860 kb on - strand, within HP15_3898 at 4128.911 kb on + strand, within HP15_3898 at 4128.924 kb on - strand, within HP15_3898 at 4128.975 kb on + strand, within HP15_3898 at 4128.981 kb on + strand, within HP15_3898 at 4128.987 kb on + strand, within HP15_3898 at 4128.987 kb on + strand, within HP15_3898 at 4129.096 kb on + strand, within HP15_3898
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 4,127,020 - HP15_3896 0.23 +0.8 4,127,032 - HP15_3896 0.24 +1.9 4,127,056 + HP15_3896 0.26 +2.0 4,127,211 + HP15_3896 0.40 +0.3 4,127,244 + HP15_3896 0.43 +0.7 4,127,249 + HP15_3896 0.44 +1.3 4,127,257 - HP15_3896 0.44 -0.1 4,127,295 - HP15_3896 0.48 +1.7 4,127,380 + HP15_3896 0.55 +0.0 4,127,385 + HP15_3896 0.56 -0.2 4,127,424 + HP15_3896 0.59 +1.0 4,127,502 + HP15_3896 0.66 -0.3 4,127,510 - HP15_3896 0.67 -0.8 4,127,593 + HP15_3896 0.74 -0.8 4,127,603 + HP15_3896 0.75 -0.0 4,127,611 - HP15_3896 0.76 -0.5 4,127,611 - HP15_3896 0.76 -0.6 4,127,617 + HP15_3896 0.76 +1.6 4,127,659 + HP15_3896 0.80 -0.2 4,127,701 + HP15_3896 0.84 +0.6 4,127,701 + HP15_3896 0.84 -0.5 4,127,701 + HP15_3896 0.84 +1.0 4,127,703 - HP15_3896 0.84 +0.3 4,127,709 - HP15_3896 0.85 +1.7 4,127,709 - HP15_3896 0.85 +0.1 4,127,733 + HP15_3896 0.87 +0.6 4,127,733 + HP15_3896 0.87 -0.4 4,127,752 - HP15_3896 0.89 -0.2 4,127,812 + +0.3 4,127,812 + +0.5 4,127,820 - -0.1 4,127,820 - +0.9 4,127,987 - HP15_3897 0.15 +1.4 4,127,989 + HP15_3897 0.16 +1.6 4,128,370 + HP15_3898 0.11 -0.3 4,128,751 + HP15_3898 0.37 -0.0 4,128,755 + HP15_3898 0.37 +0.6 4,128,775 - HP15_3898 0.38 +1.3 4,128,797 + HP15_3898 0.40 +0.6 4,128,842 + HP15_3898 0.43 -1.0 4,128,860 - HP15_3898 0.44 -1.5 4,128,911 + HP15_3898 0.47 -1.2 4,128,924 - HP15_3898 0.48 +0.5 4,128,975 + HP15_3898 0.52 -0.2 4,128,981 + HP15_3898 0.52 +0.5 4,128,987 + HP15_3898 0.53 -0.1 4,128,987 + HP15_3898 0.53 +1.2 4,129,096 + HP15_3898 0.60 +1.4
Or see this region's nucleotide sequence