Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02120

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p02100 and PGA1_262p02110 overlap by 4 nucleotidesPGA1_262p02110 and PGA1_262p02120 overlap by 17 nucleotidesPGA1_262p02120 and PGA1_262p02130 are separated by 1 nucleotidesPGA1_262p02130 and PGA1_262p02140 overlap by 4 nucleotides PGA1_262p02100: PGA1_262p02100 - methyltransferase, cheR type, at 226,898 to 227,761 _262p02100 PGA1_262p02110: PGA1_262p02110 - putative chemotaxis protein CheW, at 227,758 to 228,246 _262p02110 PGA1_262p02120: PGA1_262p02120 - chemotaxis protein CheA, at 228,230 to 230,365 _262p02120 PGA1_262p02130: PGA1_262p02130 - response regulator receiver, at 230,367 to 230,741 _262p02130 PGA1_262p02140: PGA1_262p02140 - hypothetical protein, at 230,738 to 231,142 _262p02140 Position (kb) 228 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 227.245 kb on - strand, within PGA1_262p02100at 227.247 kb on + strand, within PGA1_262p02100at 227.339 kb on - strand, within PGA1_262p02100at 227.371 kb on + strand, within PGA1_262p02100at 227.371 kb on - strand, within PGA1_262p02100at 227.371 kb on - strand, within PGA1_262p02100at 227.372 kb on - strand, within PGA1_262p02100at 227.372 kb on - strand, within PGA1_262p02100at 227.397 kb on + strand, within PGA1_262p02100at 227.397 kb on + strand, within PGA1_262p02100at 227.405 kb on - strand, within PGA1_262p02100at 227.405 kb on - strand, within PGA1_262p02100at 227.519 kb on + strand, within PGA1_262p02100at 227.522 kb on + strand, within PGA1_262p02100at 227.548 kb on + strand, within PGA1_262p02100at 227.548 kb on + strand, within PGA1_262p02100at 227.566 kb on - strand, within PGA1_262p02100at 227.662 kb on + strand, within PGA1_262p02100at 227.662 kb on + strand, within PGA1_262p02100at 227.716 kb on + strandat 227.716 kb on + strandat 227.724 kb on - strandat 227.886 kb on + strand, within PGA1_262p02110at 227.887 kb on - strand, within PGA1_262p02110at 227.894 kb on - strand, within PGA1_262p02110at 227.956 kb on - strand, within PGA1_262p02110at 228.050 kb on - strand, within PGA1_262p02110at 228.154 kb on + strand, within PGA1_262p02110at 228.385 kb on + strandat 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.643 kb on + strand, within PGA1_262p02120at 228.648 kb on + strand, within PGA1_262p02120at 228.656 kb on - strand, within PGA1_262p02120at 228.661 kb on - strand, within PGA1_262p02120at 228.673 kb on + strand, within PGA1_262p02120at 228.673 kb on + strand, within PGA1_262p02120at 228.724 kb on - strand, within PGA1_262p02120at 228.728 kb on + strand, within PGA1_262p02120at 228.750 kb on + strand, within PGA1_262p02120at 228.764 kb on + strand, within PGA1_262p02120at 228.772 kb on - strand, within PGA1_262p02120at 228.797 kb on + strand, within PGA1_262p02120at 228.828 kb on - strand, within PGA1_262p02120at 229.034 kb on - strand, within PGA1_262p02120at 229.054 kb on + strand, within PGA1_262p02120at 229.093 kb on + strand, within PGA1_262p02120at 229.169 kb on - strand, within PGA1_262p02120at 229.254 kb on - strand, within PGA1_262p02120at 229.328 kb on - strand, within PGA1_262p02120at 229.395 kb on + strand, within PGA1_262p02120at 229.449 kb on - strand, within PGA1_262p02120at 229.557 kb on + strand, within PGA1_262p02120at 229.560 kb on - strand, within PGA1_262p02120at 229.717 kb on - strand, within PGA1_262p02120at 229.727 kb on - strand, within PGA1_262p02120at 229.727 kb on - strand, within PGA1_262p02120at 229.727 kb on - strand, within PGA1_262p02120at 229.742 kb on + strand, within PGA1_262p02120at 229.771 kb on + strand, within PGA1_262p02120at 229.794 kb on - strand, within PGA1_262p02120at 229.803 kb on - strand, within PGA1_262p02120at 229.807 kb on + strand, within PGA1_262p02120at 229.815 kb on - strand, within PGA1_262p02120at 229.833 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.899 kb on + strand, within PGA1_262p02120at 229.907 kb on - strand, within PGA1_262p02120at 229.907 kb on - strand, within PGA1_262p02120at 229.907 kb on - strand, within PGA1_262p02120at 229.907 kb on - strand, within PGA1_262p02120at 229.907 kb on - strand, within PGA1_262p02120at 229.958 kb on - strand, within PGA1_262p02120at 230.002 kb on + strand, within PGA1_262p02120at 230.046 kb on - strand, within PGA1_262p02120at 230.268 kb on - strandat 230.268 kb on - strandat 230.268 kb on - strandat 230.268 kb on - strandat 230.268 kb on - strandat 230.292 kb on + strandat 230.300 kb on - strandat 230.477 kb on - strand, within PGA1_262p02130at 230.533 kb on + strand, within PGA1_262p02130at 230.552 kb on + strand, within PGA1_262p02130at 230.552 kb on + strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.597 kb on - strand, within PGA1_262p02130at 230.622 kb on + strand, within PGA1_262p02130at 230.622 kb on + strand, within PGA1_262p02130at 230.630 kb on - strand, within PGA1_262p02130at 230.640 kb on + strand, within PGA1_262p02130at 230.645 kb on - strand, within PGA1_262p02130at 230.655 kb on - strand, within PGA1_262p02130at 230.672 kb on + strand, within PGA1_262p02130at 230.865 kb on - strand, within PGA1_262p02140at 230.875 kb on + strand, within PGA1_262p02140at 230.883 kb on - strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.936 kb on - strand, within PGA1_262p02140at 230.952 kb on + strand, within PGA1_262p02140at 230.979 kb on - strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.989 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.992 kb on + strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.067 kb on - strand, within PGA1_262p02140at 231.075 kb on + strand, within PGA1_262p02140at 231.213 kb on + strandat 231.245 kb on - strandat 231.250 kb on + strandat 231.252 kb on + strandat 231.272 kb on + strandat 231.279 kb on - strandat 231.282 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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227,245 - PGA1_262p02100 0.40 +1.8
227,247 + PGA1_262p02100 0.40 +0.3
227,339 - PGA1_262p02100 0.51 -0.1
227,371 + PGA1_262p02100 0.55 +1.0
227,371 - PGA1_262p02100 0.55 -0.7
227,371 - PGA1_262p02100 0.55 -0.4
227,372 - PGA1_262p02100 0.55 +0.3
227,372 - PGA1_262p02100 0.55 +0.5
227,397 + PGA1_262p02100 0.58 -0.3
227,397 + PGA1_262p02100 0.58 -2.0
227,405 - PGA1_262p02100 0.59 -1.1
227,405 - PGA1_262p02100 0.59 +0.2
227,519 + PGA1_262p02100 0.72 +0.5
227,522 + PGA1_262p02100 0.72 -1.1
227,548 + PGA1_262p02100 0.75 +0.9
227,548 + PGA1_262p02100 0.75 -0.6
227,566 - PGA1_262p02100 0.77 -1.0
227,662 + PGA1_262p02100 0.88 -1.0
227,662 + PGA1_262p02100 0.88 +1.4
227,716 + -0.2
227,716 + +0.4
227,724 - -1.3
227,886 + PGA1_262p02110 0.26 +0.7
227,887 - PGA1_262p02110 0.26 -0.2
227,894 - PGA1_262p02110 0.28 -1.5
227,956 - PGA1_262p02110 0.40 -0.3
228,050 - PGA1_262p02110 0.60 +1.5
228,154 + PGA1_262p02110 0.81 -0.7
228,385 + -1.0
228,504 + PGA1_262p02120 0.13 +0.6
228,504 + PGA1_262p02120 0.13 -0.7
228,504 + PGA1_262p02120 0.13 +0.3
228,504 + PGA1_262p02120 0.13 +1.8
228,504 + PGA1_262p02120 0.13 -2.0
228,504 + PGA1_262p02120 0.13 +0.6
228,504 + PGA1_262p02120 0.13 +0.0
228,504 + PGA1_262p02120 0.13 +1.3
228,504 + PGA1_262p02120 0.13 -0.1
228,504 + PGA1_262p02120 0.13 +0.0
228,512 - PGA1_262p02120 0.13 +1.4
228,512 - PGA1_262p02120 0.13 +1.6
228,512 - PGA1_262p02120 0.13 +0.0
228,512 - PGA1_262p02120 0.13 -2.8
228,512 - PGA1_262p02120 0.13 -0.4
228,512 - PGA1_262p02120 0.13 -1.0
228,512 - PGA1_262p02120 0.13 -0.1
228,512 - PGA1_262p02120 0.13 -2.3
228,643 + PGA1_262p02120 0.19 -1.5
228,648 + PGA1_262p02120 0.20 -2.3
228,656 - PGA1_262p02120 0.20 -1.0
228,661 - PGA1_262p02120 0.20 +0.5
228,673 + PGA1_262p02120 0.21 -0.5
228,673 + PGA1_262p02120 0.21 +0.0
228,724 - PGA1_262p02120 0.23 +1.3
228,728 + PGA1_262p02120 0.23 +0.0
228,750 + PGA1_262p02120 0.24 -0.6
228,764 + PGA1_262p02120 0.25 -1.1
228,772 - PGA1_262p02120 0.25 +0.7
228,797 + PGA1_262p02120 0.27 -0.4
228,828 - PGA1_262p02120 0.28 +0.0
229,034 - PGA1_262p02120 0.38 -0.3
229,054 + PGA1_262p02120 0.39 -1.1
229,093 + PGA1_262p02120 0.40 -2.0
229,169 - PGA1_262p02120 0.44 -1.5
229,254 - PGA1_262p02120 0.48 +2.0
229,328 - PGA1_262p02120 0.51 -1.2
229,395 + PGA1_262p02120 0.55 -2.0
229,449 - PGA1_262p02120 0.57 +0.7
229,557 + PGA1_262p02120 0.62 -1.0
229,560 - PGA1_262p02120 0.62 +1.5
229,717 - PGA1_262p02120 0.70 -2.0
229,727 - PGA1_262p02120 0.70 -2.0
229,727 - PGA1_262p02120 0.70 +0.8
229,727 - PGA1_262p02120 0.70 +0.0
229,742 + PGA1_262p02120 0.71 -0.0
229,771 + PGA1_262p02120 0.72 -1.5
229,794 - PGA1_262p02120 0.73 -0.5
229,803 - PGA1_262p02120 0.74 -0.2
229,807 + PGA1_262p02120 0.74 +0.4
229,815 - PGA1_262p02120 0.74 -0.5
229,833 + PGA1_262p02120 0.75 +0.9
229,899 + PGA1_262p02120 0.78 +0.7
229,899 + PGA1_262p02120 0.78 +0.4
229,899 + PGA1_262p02120 0.78 -2.2
229,899 + PGA1_262p02120 0.78 +0.3
229,899 + PGA1_262p02120 0.78 +0.2
229,899 + PGA1_262p02120 0.78 -0.5
229,899 + PGA1_262p02120 0.78 -0.5
229,907 - PGA1_262p02120 0.79 +0.0
229,907 - PGA1_262p02120 0.79 -1.2
229,907 - PGA1_262p02120 0.79 +0.6
229,907 - PGA1_262p02120 0.79 +2.0
229,907 - PGA1_262p02120 0.79 +0.4
229,958 - PGA1_262p02120 0.81 +1.3
230,002 + PGA1_262p02120 0.83 -2.5
230,046 - PGA1_262p02120 0.85 +0.0
230,268 - -0.8
230,268 - -2.5
230,268 - -0.0
230,268 - +0.0
230,268 - +0.2
230,292 + -0.8
230,300 - -0.7
230,477 - PGA1_262p02130 0.29 -0.2
230,533 + PGA1_262p02130 0.44 -0.5
230,552 + PGA1_262p02130 0.49 +0.7
230,552 + PGA1_262p02130 0.49 -0.5
230,560 - PGA1_262p02130 0.51 +0.9
230,560 - PGA1_262p02130 0.51 +0.7
230,560 - PGA1_262p02130 0.51 +0.1
230,560 - PGA1_262p02130 0.51 -0.3
230,560 - PGA1_262p02130 0.51 -0.2
230,597 - PGA1_262p02130 0.61 +0.2
230,622 + PGA1_262p02130 0.68 +0.5
230,622 + PGA1_262p02130 0.68 +2.6
230,630 - PGA1_262p02130 0.70 +1.6
230,640 + PGA1_262p02130 0.73 +1.0
230,645 - PGA1_262p02130 0.74 +1.4
230,655 - PGA1_262p02130 0.77 +0.0
230,672 + PGA1_262p02130 0.81 +0.2
230,865 - PGA1_262p02140 0.31 -1.1
230,875 + PGA1_262p02140 0.34 -0.4
230,883 - PGA1_262p02140 0.36 -0.1
230,928 + PGA1_262p02140 0.47 +1.4
230,928 + PGA1_262p02140 0.47 -1.3
230,928 + PGA1_262p02140 0.47 +2.2
230,936 - PGA1_262p02140 0.49 -0.8
230,952 + PGA1_262p02140 0.53 +0.6
230,979 - PGA1_262p02140 0.60 -0.8
230,982 + PGA1_262p02140 0.60 +1.0
230,982 + PGA1_262p02140 0.60 +0.8
230,982 + PGA1_262p02140 0.60 -0.6
230,982 + PGA1_262p02140 0.60 -1.1
230,989 - PGA1_262p02140 0.62 -0.5
230,990 - PGA1_262p02140 0.62 +1.6
230,990 - PGA1_262p02140 0.62 +0.4
230,990 - PGA1_262p02140 0.62 +0.6
230,990 - PGA1_262p02140 0.62 -0.3
230,990 - PGA1_262p02140 0.62 +3.1
230,990 - PGA1_262p02140 0.62 -0.4
230,990 - PGA1_262p02140 0.62 +0.0
230,992 + PGA1_262p02140 0.63 +0.2
231,000 - PGA1_262p02140 0.65 +0.6
231,000 - PGA1_262p02140 0.65 -0.2
231,000 - PGA1_262p02140 0.65 -0.8
231,000 - PGA1_262p02140 0.65 -1.2
231,000 - PGA1_262p02140 0.65 +0.2
231,000 - PGA1_262p02140 0.65 +0.9
231,000 - PGA1_262p02140 0.65 +1.4
231,000 - PGA1_262p02140 0.65 +0.3
231,067 - PGA1_262p02140 0.81 +1.0
231,075 + PGA1_262p02140 0.83 -0.8
231,213 + +0.2
231,245 - +0.0
231,250 + +1.0
231,252 + +0.0
231,272 + -1.0
231,279 - -0.6
231,282 - -0.7

Or see this region's nucleotide sequence