Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3717 and HP15_3718 are separated by 83 nucleotides HP15_3718 and HP15_3719 are separated by 5 nucleotides HP15_3719 and HP15_3720 are separated by 105 nucleotides
HP15_3717: HP15_3717 - conserved hypothetical protein, at 3,932,188 to 3,932,619
_3717
HP15_3718: HP15_3718 - conserved hypothetical protein, secreted, at 3,932,703 to 3,933,143
_3718
HP15_3719: HP15_3719 - short-chain dehydrogenase/reductase SDR, at 3,933,149 to 3,933,856
_3719
HP15_3720: HP15_3720 - DNA damage response nuclease (from data) , at 3,933,962 to 3,935,671
_3720
Position (kb)
3933
3934 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3932.193 kb on - strand at 3932.195 kb on + strand at 3932.195 kb on + strand at 3932.212 kb on + strand at 3932.241 kb on - strand, within HP15_3717 at 3932.345 kb on - strand, within HP15_3717 at 3932.378 kb on + strand, within HP15_3717 at 3932.427 kb on + strand, within HP15_3717 at 3932.521 kb on + strand, within HP15_3717 at 3932.524 kb on - strand, within HP15_3717 at 3932.529 kb on - strand, within HP15_3717 at 3932.572 kb on - strand, within HP15_3717 at 3932.652 kb on + strand at 3932.652 kb on + strand at 3932.660 kb on - strand at 3932.660 kb on - strand at 3932.660 kb on - strand at 3932.687 kb on + strand at 3932.772 kb on + strand, within HP15_3718 at 3932.824 kb on + strand, within HP15_3718 at 3932.824 kb on + strand, within HP15_3718 at 3932.832 kb on - strand, within HP15_3718 at 3932.832 kb on - strand, within HP15_3718 at 3932.868 kb on + strand, within HP15_3718 at 3932.868 kb on + strand, within HP15_3718 at 3932.873 kb on + strand, within HP15_3718 at 3932.873 kb on + strand, within HP15_3718 at 3932.876 kb on - strand, within HP15_3718 at 3932.881 kb on - strand, within HP15_3718 at 3932.881 kb on - strand, within HP15_3718 at 3932.897 kb on - strand, within HP15_3718 at 3932.919 kb on + strand, within HP15_3718 at 3932.927 kb on - strand, within HP15_3718 at 3932.963 kb on + strand, within HP15_3718 at 3932.983 kb on + strand, within HP15_3718 at 3933.016 kb on + strand, within HP15_3718 at 3933.083 kb on + strand, within HP15_3718 at 3933.390 kb on - strand, within HP15_3719 at 3933.391 kb on - strand, within HP15_3719 at 3933.392 kb on + strand, within HP15_3719 at 3933.397 kb on + strand, within HP15_3719 at 3933.445 kb on - strand, within HP15_3719 at 3933.466 kb on + strand, within HP15_3719 at 3933.488 kb on + strand, within HP15_3719 at 3933.712 kb on - strand, within HP15_3719 at 3933.774 kb on + strand, within HP15_3719 at 3933.785 kb on + strand, within HP15_3719 at 3933.789 kb on + strand at 3933.797 kb on - strand at 3933.806 kb on + strand at 3933.814 kb on - strand at 3933.873 kb on - strand at 3933.966 kb on - strand at 3933.979 kb on + strand at 3933.991 kb on + strand at 3933.992 kb on - strand at 3933.997 kb on - strand at 3933.997 kb on - strand at 3934.058 kb on + strand at 3934.058 kb on + strand at 3934.066 kb on - strand at 3934.218 kb on - strand, within HP15_3720 at 3934.272 kb on + strand, within HP15_3720 at 3934.274 kb on + strand, within HP15_3720 at 3934.284 kb on + strand, within HP15_3720 at 3934.297 kb on + strand, within HP15_3720 at 3934.365 kb on + strand, within HP15_3720 at 3934.428 kb on - strand, within HP15_3720 at 3934.429 kb on - strand, within HP15_3720 at 3934.461 kb on - strand, within HP15_3720 at 3934.551 kb on + strand, within HP15_3720 at 3934.556 kb on + strand, within HP15_3720 at 3934.562 kb on + strand, within HP15_3720 at 3934.587 kb on + strand, within HP15_3720 at 3934.632 kb on + strand, within HP15_3720 at 3934.655 kb on + strand, within HP15_3720 at 3934.670 kb on + strand, within HP15_3720 at 3934.673 kb on - strand, within HP15_3720
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 3,932,193 - -0.7 3,932,195 + -0.3 3,932,195 + -0.1 3,932,212 + +0.0 3,932,241 - HP15_3717 0.12 -3.0 3,932,345 - HP15_3717 0.36 -0.7 3,932,378 + HP15_3717 0.44 +0.3 3,932,427 + HP15_3717 0.55 +0.5 3,932,521 + HP15_3717 0.77 +0.2 3,932,524 - HP15_3717 0.78 -0.5 3,932,529 - HP15_3717 0.79 +0.9 3,932,572 - HP15_3717 0.89 -1.7 3,932,652 + -0.2 3,932,652 + -1.1 3,932,660 - +1.2 3,932,660 - -0.8 3,932,660 - -0.4 3,932,687 + +1.0 3,932,772 + HP15_3718 0.16 -0.1 3,932,824 + HP15_3718 0.27 -0.5 3,932,824 + HP15_3718 0.27 +3.5 3,932,832 - HP15_3718 0.29 -0.6 3,932,832 - HP15_3718 0.29 -0.0 3,932,868 + HP15_3718 0.37 -0.9 3,932,868 + HP15_3718 0.37 +1.5 3,932,873 + HP15_3718 0.39 +0.4 3,932,873 + HP15_3718 0.39 -0.2 3,932,876 - HP15_3718 0.39 -1.3 3,932,881 - HP15_3718 0.40 +0.4 3,932,881 - HP15_3718 0.40 +0.9 3,932,897 - HP15_3718 0.44 +0.5 3,932,919 + HP15_3718 0.49 -0.0 3,932,927 - HP15_3718 0.51 -0.7 3,932,963 + HP15_3718 0.59 -0.5 3,932,983 + HP15_3718 0.63 -0.3 3,933,016 + HP15_3718 0.71 +0.8 3,933,083 + HP15_3718 0.86 -1.0 3,933,390 - HP15_3719 0.34 +1.3 3,933,391 - HP15_3719 0.34 +1.3 3,933,392 + HP15_3719 0.34 +1.6 3,933,397 + HP15_3719 0.35 +0.0 3,933,445 - HP15_3719 0.42 +1.4 3,933,466 + HP15_3719 0.45 +1.3 3,933,488 + HP15_3719 0.48 -0.0 3,933,712 - HP15_3719 0.80 -0.5 3,933,774 + HP15_3719 0.88 -0.2 3,933,785 + HP15_3719 0.90 -0.2 3,933,789 + -0.0 3,933,797 - +1.3 3,933,806 + -0.2 3,933,814 - -0.2 3,933,873 - +0.9 3,933,966 - -0.9 3,933,979 + +0.4 3,933,991 + +0.6 3,933,992 - +0.5 3,933,997 - +1.6 3,933,997 - +0.6 3,934,058 + +0.6 3,934,058 + +0.0 3,934,066 - -0.4 3,934,218 - HP15_3720 0.15 -0.6 3,934,272 + HP15_3720 0.18 +0.3 3,934,274 + HP15_3720 0.18 +0.3 3,934,284 + HP15_3720 0.19 +0.7 3,934,297 + HP15_3720 0.20 -0.9 3,934,365 + HP15_3720 0.24 -1.1 3,934,428 - HP15_3720 0.27 +1.8 3,934,429 - HP15_3720 0.27 -0.1 3,934,461 - HP15_3720 0.29 -0.9 3,934,551 + HP15_3720 0.34 -0.4 3,934,556 + HP15_3720 0.35 -0.0 3,934,562 + HP15_3720 0.35 +0.1 3,934,587 + HP15_3720 0.37 +1.5 3,934,632 + HP15_3720 0.39 +0.3 3,934,655 + HP15_3720 0.41 +0.6 3,934,670 + HP15_3720 0.41 -0.3 3,934,673 - HP15_3720 0.42 -0.3
Or see this region's nucleotide sequence