Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3674 and HP15_3675 are separated by 55 nucleotides HP15_3675 and HP15_3676 are separated by 101 nucleotides HP15_3676 and HP15_3677 are separated by 30 nucleotides
HP15_3674: HP15_3674 - AraC-family transcriptional regulator, at 3,873,481 to 3,874,440
_3674
HP15_3675: HP15_3675 - conserved hypothetical protein, at 3,874,496 to 3,874,966
_3675
HP15_3676: HP15_3676 - glucosamine-fructose-6-phosphate aminotransferase, isomerizing, at 3,875,068 to 3,876,900
_3676
HP15_3677: HP15_3677 - bifunctional protein GlmU, at 3,876,931 to 3,878,199
_3677
Position (kb)
3875
3876
3877 Strain fitness (log2 ratio)
-1
0
1
2 at 3874.088 kb on + strand, within HP15_3674 at 3874.167 kb on + strand, within HP15_3674 at 3874.175 kb on - strand, within HP15_3674 at 3874.232 kb on - strand, within HP15_3674 at 3874.318 kb on - strand, within HP15_3674 at 3874.348 kb on - strand at 3874.382 kb on + strand at 3874.440 kb on + strand at 3874.440 kb on + strand at 3874.440 kb on + strand at 3874.448 kb on - strand at 3874.448 kb on - strand at 3874.457 kb on - strand at 3874.459 kb on + strand at 3874.467 kb on + strand at 3874.487 kb on + strand at 3874.502 kb on - strand at 3874.671 kb on - strand, within HP15_3675 at 3874.695 kb on - strand, within HP15_3675 at 3874.706 kb on + strand, within HP15_3675 at 3874.748 kb on + strand, within HP15_3675 at 3874.810 kb on + strand, within HP15_3675 at 3874.953 kb on - strand at 3874.955 kb on + strand at 3875.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 3,874,088 + HP15_3674 0.63 -0.2 3,874,167 + HP15_3674 0.71 +0.3 3,874,175 - HP15_3674 0.72 +0.2 3,874,232 - HP15_3674 0.78 -1.1 3,874,318 - HP15_3674 0.87 -0.5 3,874,348 - -0.4 3,874,382 + -0.5 3,874,440 + +0.9 3,874,440 + +0.5 3,874,440 + +0.3 3,874,448 - +1.1 3,874,448 - +1.3 3,874,457 - -0.9 3,874,459 + +2.3 3,874,467 + -1.3 3,874,487 + -0.6 3,874,502 - +1.8 3,874,671 - HP15_3675 0.37 -0.7 3,874,695 - HP15_3675 0.42 +2.3 3,874,706 + HP15_3675 0.45 -0.0 3,874,748 + HP15_3675 0.54 -1.4 3,874,810 + HP15_3675 0.67 +1.1 3,874,953 - +1.5 3,874,955 + +2.2 3,875,052 + +0.1
Or see this region's nucleotide sequence