Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03300 and PGA1_c03310 are separated by 166 nucleotides PGA1_c03310 and PGA1_c03320 are separated by 157 nucleotides PGA1_c03320 and PGA1_c03330 are separated by 140 nucleotides
PGA1_c03300: PGA1_c03300 - glyoxalase/bleomycin resistance protein domain-containing protein, at 315,783 to 316,166
_c03300
PGA1_c03310: PGA1_c03310 - redox-sensitive transcriptional activator, at 316,333 to 316,827
_c03310
PGA1_c03320: PGA1_c03320 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 316,985 to 318,634
_c03320
PGA1_c03330: PGA1_c03330 - tetratricopeptide repeat-containing protein, at 318,775 to 320,523
_c03330
Position (kb) 316
317
318
319 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 315.989 kb on + strand, within PGA1_c03300 at 315.989 kb on - strand, within PGA1_c03300 at 315.997 kb on - strand, within PGA1_c03300 at 316.033 kb on + strand, within PGA1_c03300 at 316.034 kb on + strand, within PGA1_c03300 at 316.034 kb on + strand, within PGA1_c03300 at 316.042 kb on - strand, within PGA1_c03300 at 316.123 kb on + strand, within PGA1_c03300 at 316.123 kb on + strand, within PGA1_c03300 at 316.156 kb on - strand at 316.167 kb on + strand at 316.169 kb on - strand at 316.284 kb on + strand at 316.299 kb on + strand at 316.307 kb on - strand at 316.307 kb on - strand at 316.314 kb on - strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.350 kb on - strand at 316.364 kb on + strand at 316.372 kb on - strand at 316.419 kb on + strand, within PGA1_c03310 at 316.419 kb on + strand, within PGA1_c03310 at 316.419 kb on + strand, within PGA1_c03310 at 316.419 kb on + strand, within PGA1_c03310 at 316.421 kb on + strand, within PGA1_c03310 at 316.425 kb on + strand, within PGA1_c03310 at 316.433 kb on - strand, within PGA1_c03310 at 316.439 kb on - strand, within PGA1_c03310 at 316.440 kb on + strand, within PGA1_c03310 at 316.474 kb on + strand, within PGA1_c03310 at 316.474 kb on + strand, within PGA1_c03310 at 316.519 kb on - strand, within PGA1_c03310 at 316.561 kb on + strand, within PGA1_c03310 at 316.569 kb on - strand, within PGA1_c03310 at 316.569 kb on - strand, within PGA1_c03310 at 316.569 kb on - strand, within PGA1_c03310 at 316.597 kb on - strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.732 kb on + strand, within PGA1_c03310 at 316.736 kb on - strand, within PGA1_c03310 at 316.738 kb on + strand, within PGA1_c03310 at 316.744 kb on + strand, within PGA1_c03310 at 316.760 kb on + strand, within PGA1_c03310 at 316.852 kb on + strand at 316.857 kb on - strand at 316.860 kb on - strand at 316.862 kb on + strand at 316.862 kb on + strand at 316.862 kb on + strand at 316.862 kb on + strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.878 kb on + strand at 316.909 kb on - strand at 316.942 kb on - strand at 316.942 kb on - strand at 316.957 kb on + strand at 316.957 kb on + strand at 316.960 kb on - strand at 316.960 kb on - strand at 316.960 kb on - strand at 316.964 kb on - strand at 316.965 kb on - strand at 316.965 kb on - strand at 316.965 kb on - strand at 316.965 kb on - strand at 318.692 kb on - strand at 318.694 kb on + strand at 318.702 kb on - strand at 318.714 kb on - strand at 318.714 kb on - strand at 318.757 kb on + strand at 318.757 kb on + strand at 318.757 kb on + strand at 318.765 kb on - strand at 318.765 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 315,989 + PGA1_c03300 0.54 -1.4 315,989 - PGA1_c03300 0.54 -0.0 315,997 - PGA1_c03300 0.56 -1.4 316,033 + PGA1_c03300 0.65 +0.3 316,034 + PGA1_c03300 0.65 +0.3 316,034 + PGA1_c03300 0.65 +1.5 316,042 - PGA1_c03300 0.67 +0.6 316,123 + PGA1_c03300 0.89 -1.3 316,123 + PGA1_c03300 0.89 -2.4 316,156 - +0.5 316,167 + +2.0 316,169 - +1.1 316,284 + -0.9 316,299 + +0.2 316,307 - +0.6 316,307 - +0.4 316,314 - +1.4 316,316 + +0.6 316,316 + +3.4 316,316 + +0.1 316,316 + +0.6 316,316 + -1.9 316,316 + +3.3 316,316 + +0.2 316,316 + -2.9 316,316 + -1.4 316,324 - +1.4 316,324 - +1.1 316,324 - +1.0 316,324 - -0.3 316,324 - +0.6 316,324 - +0.6 316,324 - +0.5 316,324 - +0.6 316,324 - +0.2 316,324 - +2.0 316,324 - -0.8 316,350 - +1.4 316,364 + +0.9 316,372 - -0.2 316,419 + PGA1_c03310 0.17 +0.3 316,419 + PGA1_c03310 0.17 -0.1 316,419 + PGA1_c03310 0.17 +0.5 316,419 + PGA1_c03310 0.17 -0.0 316,421 + PGA1_c03310 0.18 +0.8 316,425 + PGA1_c03310 0.19 -0.2 316,433 - PGA1_c03310 0.20 -1.4 316,439 - PGA1_c03310 0.21 +0.8 316,440 + PGA1_c03310 0.22 +1.2 316,474 + PGA1_c03310 0.28 +1.6 316,474 + PGA1_c03310 0.28 +0.3 316,519 - PGA1_c03310 0.38 +0.8 316,561 + PGA1_c03310 0.46 -1.9 316,569 - PGA1_c03310 0.48 +0.4 316,569 - PGA1_c03310 0.48 -1.7 316,569 - PGA1_c03310 0.48 +0.4 316,597 - PGA1_c03310 0.53 +1.1 316,703 + PGA1_c03310 0.75 +0.2 316,703 + PGA1_c03310 0.75 -0.1 316,703 + PGA1_c03310 0.75 +0.3 316,703 + PGA1_c03310 0.75 -0.5 316,732 + PGA1_c03310 0.81 -1.1 316,736 - PGA1_c03310 0.81 +0.2 316,738 + PGA1_c03310 0.82 -0.5 316,744 + PGA1_c03310 0.83 -0.4 316,760 + PGA1_c03310 0.86 +1.6 316,852 + +1.0 316,857 - -0.2 316,860 - -0.7 316,862 + +0.7 316,862 + +0.5 316,862 + -0.6 316,862 + -1.5 316,870 - -1.2 316,870 - +1.1 316,870 - +0.3 316,870 - +0.6 316,870 - -2.8 316,870 - -1.3 316,878 + +0.1 316,909 - +0.2 316,942 - -1.9 316,942 - +2.2 316,957 + +1.6 316,957 + +0.2 316,960 - -0.1 316,960 - -3.1 316,960 - -1.4 316,964 - +0.2 316,965 - -0.1 316,965 - +1.6 316,965 - -0.4 316,965 - -1.9 318,692 - -0.4 318,694 + -0.6 318,702 - +0.9 318,714 - +0.5 318,714 - +0.2 318,757 + +1.0 318,757 + +0.6 318,757 + +0.8 318,765 - +0.4 318,765 - +0.9
Or see this region's nucleotide sequence