Strain Fitness in Marinobacter adhaerens HP15 around HP15_3126

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3125 and HP15_3126 are separated by 58 nucleotidesHP15_3126 and HP15_3127 are separated by 33 nucleotidesHP15_3127 and HP15_3128 are separated by 11 nucleotides HP15_3125: HP15_3125 - sulfite oxidase protein, at 3,278,346 to 3,279,572 _3125 HP15_3126: HP15_3126 - cytochrome c protein, at 3,279,631 to 3,279,951 _3126 HP15_3127: HP15_3127 - methionine sulfoxide reductase B, at 3,279,985 to 3,280,410 _3127 HP15_3128: HP15_3128 - methionine sulfoxide reductase A, at 3,280,422 to 3,281,075 _3128 Position (kb) 3279 3280Strain fitness (log2 ratio) -1 0 1 2 3at 3278.640 kb on + strand, within HP15_3125at 3278.671 kb on + strand, within HP15_3125at 3278.671 kb on + strand, within HP15_3125at 3278.671 kb on + strand, within HP15_3125at 3278.684 kb on + strand, within HP15_3125at 3278.760 kb on + strand, within HP15_3125at 3278.768 kb on - strand, within HP15_3125at 3278.768 kb on - strand, within HP15_3125at 3278.788 kb on - strand, within HP15_3125at 3278.822 kb on - strand, within HP15_3125at 3278.845 kb on - strand, within HP15_3125at 3278.855 kb on - strand, within HP15_3125at 3278.857 kb on + strand, within HP15_3125at 3278.857 kb on + strand, within HP15_3125at 3278.940 kb on + strand, within HP15_3125at 3278.948 kb on - strand, within HP15_3125at 3278.985 kb on + strand, within HP15_3125at 3279.047 kb on - strand, within HP15_3125at 3279.052 kb on - strand, within HP15_3125at 3279.084 kb on + strand, within HP15_3125at 3279.155 kb on + strand, within HP15_3125at 3279.233 kb on + strand, within HP15_3125at 3279.382 kb on + strand, within HP15_3125at 3279.416 kb on + strand, within HP15_3125at 3279.493 kb on - strandat 3279.612 kb on - strandat 3279.646 kb on + strandat 3279.654 kb on - strandat 3279.725 kb on - strand, within HP15_3126at 3279.738 kb on + strand, within HP15_3126at 3279.755 kb on + strand, within HP15_3126at 3279.755 kb on + strand, within HP15_3126at 3279.763 kb on - strand, within HP15_3126at 3279.834 kb on + strand, within HP15_3126at 3279.862 kb on - strand, within HP15_3126at 3280.025 kb on - strandat 3280.058 kb on + strand, within HP15_3127at 3280.216 kb on + strand, within HP15_3127at 3280.522 kb on + strand, within HP15_3128at 3280.603 kb on - strand, within HP15_3128at 3280.715 kb on - strand, within HP15_3128at 3280.715 kb on - strand, within HP15_3128at 3280.725 kb on - strand, within HP15_3128at 3280.762 kb on + strand, within HP15_3128at 3280.809 kb on + strand, within HP15_3128at 3280.815 kb on - strand, within HP15_3128

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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3,278,640 + HP15_3125 0.24 -0.3
3,278,671 + HP15_3125 0.26 +0.5
3,278,671 + HP15_3125 0.26 +0.7
3,278,671 + HP15_3125 0.26 +1.6
3,278,684 + HP15_3125 0.28 -0.8
3,278,760 + HP15_3125 0.34 +1.2
3,278,768 - HP15_3125 0.34 +2.0
3,278,768 - HP15_3125 0.34 +1.6
3,278,788 - HP15_3125 0.36 -1.1
3,278,822 - HP15_3125 0.39 +0.1
3,278,845 - HP15_3125 0.41 +1.8
3,278,855 - HP15_3125 0.41 -0.9
3,278,857 + HP15_3125 0.42 +1.6
3,278,857 + HP15_3125 0.42 -0.4
3,278,940 + HP15_3125 0.48 +0.2
3,278,948 - HP15_3125 0.49 +0.2
3,278,985 + HP15_3125 0.52 -0.2
3,279,047 - HP15_3125 0.57 +1.0
3,279,052 - HP15_3125 0.58 +0.1
3,279,084 + HP15_3125 0.60 -0.1
3,279,155 + HP15_3125 0.66 +1.4
3,279,233 + HP15_3125 0.72 -0.6
3,279,382 + HP15_3125 0.84 +1.3
3,279,416 + HP15_3125 0.87 -0.5
3,279,493 - +0.1
3,279,612 - -0.2
3,279,646 + -1.3
3,279,654 - -0.6
3,279,725 - HP15_3126 0.29 -0.6
3,279,738 + HP15_3126 0.33 +1.2
3,279,755 + HP15_3126 0.39 +0.5
3,279,755 + HP15_3126 0.39 +1.5
3,279,763 - HP15_3126 0.41 -0.0
3,279,834 + HP15_3126 0.63 +1.9
3,279,862 - HP15_3126 0.72 -1.2
3,280,025 - -0.8
3,280,058 + HP15_3127 0.17 -0.5
3,280,216 + HP15_3127 0.54 +0.8
3,280,522 + HP15_3128 0.15 +1.6
3,280,603 - HP15_3128 0.28 -0.2
3,280,715 - HP15_3128 0.45 +0.3
3,280,715 - HP15_3128 0.45 +3.2
3,280,725 - HP15_3128 0.46 +1.4
3,280,762 + HP15_3128 0.52 +0.7
3,280,809 + HP15_3128 0.59 -0.1
3,280,815 - HP15_3128 0.60 +0.5

Or see this region's nucleotide sequence