Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3125 and HP15_3126 are separated by 58 nucleotides HP15_3126 and HP15_3127 are separated by 33 nucleotides HP15_3127 and HP15_3128 are separated by 11 nucleotides
HP15_3125: HP15_3125 - sulfite oxidase protein, at 3,278,346 to 3,279,572
_3125
HP15_3126: HP15_3126 - cytochrome c protein, at 3,279,631 to 3,279,951
_3126
HP15_3127: HP15_3127 - methionine sulfoxide reductase B, at 3,279,985 to 3,280,410
_3127
HP15_3128: HP15_3128 - methionine sulfoxide reductase A, at 3,280,422 to 3,281,075
_3128
Position (kb)
3279
3280 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3278.640 kb on + strand, within HP15_3125 at 3278.671 kb on + strand, within HP15_3125 at 3278.671 kb on + strand, within HP15_3125 at 3278.671 kb on + strand, within HP15_3125 at 3278.684 kb on + strand, within HP15_3125 at 3278.760 kb on + strand, within HP15_3125 at 3278.768 kb on - strand, within HP15_3125 at 3278.768 kb on - strand, within HP15_3125 at 3278.788 kb on - strand, within HP15_3125 at 3278.822 kb on - strand, within HP15_3125 at 3278.845 kb on - strand, within HP15_3125 at 3278.855 kb on - strand, within HP15_3125 at 3278.857 kb on + strand, within HP15_3125 at 3278.857 kb on + strand, within HP15_3125 at 3278.940 kb on + strand, within HP15_3125 at 3278.948 kb on - strand, within HP15_3125 at 3278.985 kb on + strand, within HP15_3125 at 3279.047 kb on - strand, within HP15_3125 at 3279.052 kb on - strand, within HP15_3125 at 3279.084 kb on + strand, within HP15_3125 at 3279.155 kb on + strand, within HP15_3125 at 3279.233 kb on + strand, within HP15_3125 at 3279.382 kb on + strand, within HP15_3125 at 3279.416 kb on + strand, within HP15_3125 at 3279.493 kb on - strand at 3279.612 kb on - strand at 3279.646 kb on + strand at 3279.654 kb on - strand at 3279.725 kb on - strand, within HP15_3126 at 3279.738 kb on + strand, within HP15_3126 at 3279.755 kb on + strand, within HP15_3126 at 3279.755 kb on + strand, within HP15_3126 at 3279.763 kb on - strand, within HP15_3126 at 3279.834 kb on + strand, within HP15_3126 at 3279.862 kb on - strand, within HP15_3126 at 3280.025 kb on - strand at 3280.058 kb on + strand, within HP15_3127 at 3280.216 kb on + strand, within HP15_3127 at 3280.522 kb on + strand, within HP15_3128 at 3280.603 kb on - strand, within HP15_3128 at 3280.715 kb on - strand, within HP15_3128 at 3280.715 kb on - strand, within HP15_3128 at 3280.725 kb on - strand, within HP15_3128 at 3280.762 kb on + strand, within HP15_3128 at 3280.809 kb on + strand, within HP15_3128 at 3280.815 kb on - strand, within HP15_3128
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 3,278,640 + HP15_3125 0.24 -0.3 3,278,671 + HP15_3125 0.26 +0.5 3,278,671 + HP15_3125 0.26 +0.7 3,278,671 + HP15_3125 0.26 +1.6 3,278,684 + HP15_3125 0.28 -0.8 3,278,760 + HP15_3125 0.34 +1.2 3,278,768 - HP15_3125 0.34 +2.0 3,278,768 - HP15_3125 0.34 +1.6 3,278,788 - HP15_3125 0.36 -1.1 3,278,822 - HP15_3125 0.39 +0.1 3,278,845 - HP15_3125 0.41 +1.8 3,278,855 - HP15_3125 0.41 -0.9 3,278,857 + HP15_3125 0.42 +1.6 3,278,857 + HP15_3125 0.42 -0.4 3,278,940 + HP15_3125 0.48 +0.2 3,278,948 - HP15_3125 0.49 +0.2 3,278,985 + HP15_3125 0.52 -0.2 3,279,047 - HP15_3125 0.57 +1.0 3,279,052 - HP15_3125 0.58 +0.1 3,279,084 + HP15_3125 0.60 -0.1 3,279,155 + HP15_3125 0.66 +1.4 3,279,233 + HP15_3125 0.72 -0.6 3,279,382 + HP15_3125 0.84 +1.3 3,279,416 + HP15_3125 0.87 -0.5 3,279,493 - +0.1 3,279,612 - -0.2 3,279,646 + -1.3 3,279,654 - -0.6 3,279,725 - HP15_3126 0.29 -0.6 3,279,738 + HP15_3126 0.33 +1.2 3,279,755 + HP15_3126 0.39 +0.5 3,279,755 + HP15_3126 0.39 +1.5 3,279,763 - HP15_3126 0.41 -0.0 3,279,834 + HP15_3126 0.63 +1.9 3,279,862 - HP15_3126 0.72 -1.2 3,280,025 - -0.8 3,280,058 + HP15_3127 0.17 -0.5 3,280,216 + HP15_3127 0.54 +0.8 3,280,522 + HP15_3128 0.15 +1.6 3,280,603 - HP15_3128 0.28 -0.2 3,280,715 - HP15_3128 0.45 +0.3 3,280,715 - HP15_3128 0.45 +3.2 3,280,725 - HP15_3128 0.46 +1.4 3,280,762 + HP15_3128 0.52 +0.7 3,280,809 + HP15_3128 0.59 -0.1 3,280,815 - HP15_3128 0.60 +0.5
Or see this region's nucleotide sequence