Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2836 and HP15_2837 are separated by 238 nucleotides HP15_2837 and HP15_2838 are separated by 228 nucleotides HP15_2838 and HP15_2839 are separated by 27 nucleotides HP15_2839 and HP15_2840 are separated by 134 nucleotides
HP15_2836: HP15_2836 - conserved hypothetical protein, membrane, at 2,978,752 to 2,979,126
_2836
HP15_2837: HP15_2837 - conserved hypothetical protein, at 2,979,365 to 2,979,586
_2837
HP15_2838: HP15_2838 - oxidoreductase, short chain dehydrogenase/reductase family-like protein, at 2,979,815 to 2,980,588
_2838
HP15_2839: HP15_2839 - protein containing transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal domain, at 2,980,616 to 2,981,263
_2839
HP15_2840: HP15_2840 - conserved hypothetical protein, secreted, at 2,981,398 to 2,982,681
_2840
Position (kb)
2979
2980
2981 Strain fitness (log2 ratio)
-1
0
1
2 at 2978.859 kb on + strand, within HP15_2836 at 2978.867 kb on - strand, within HP15_2836 at 2978.883 kb on - strand, within HP15_2836 at 2978.962 kb on + strand, within HP15_2836 at 2978.994 kb on - strand, within HP15_2836 at 2979.211 kb on - strand at 2979.278 kb on + strand at 2979.313 kb on - strand at 2979.366 kb on - strand at 2979.470 kb on + strand, within HP15_2837 at 2979.515 kb on + strand, within HP15_2837 at 2979.523 kb on - strand, within HP15_2837 at 2979.671 kb on + strand at 2979.671 kb on + strand at 2979.683 kb on + strand at 2979.702 kb on - strand at 2979.704 kb on + strand at 2979.830 kb on - strand at 2979.945 kb on - strand, within HP15_2838 at 2980.237 kb on + strand, within HP15_2838 at 2980.249 kb on + strand, within HP15_2838 at 2980.331 kb on + strand, within HP15_2838 at 2980.346 kb on - strand, within HP15_2838 at 2980.388 kb on - strand, within HP15_2838 at 2980.507 kb on + strand, within HP15_2838 at 2980.527 kb on + strand at 2980.538 kb on + strand at 2980.546 kb on - strand at 2980.577 kb on + strand at 2980.582 kb on + strand at 2980.590 kb on - strand at 2980.693 kb on - strand, within HP15_2839 at 2980.740 kb on + strand, within HP15_2839 at 2980.748 kb on - strand, within HP15_2839 at 2980.817 kb on - strand, within HP15_2839 at 2980.867 kb on + strand, within HP15_2839 at 2980.955 kb on - strand, within HP15_2839 at 2981.141 kb on - strand, within HP15_2839 at 2981.177 kb on + strand, within HP15_2839 at 2981.211 kb on + strand at 2981.219 kb on - strand at 2981.221 kb on - strand at 2981.221 kb on - strand at 2981.231 kb on + strand at 2981.349 kb on - strand at 2981.356 kb on + strand at 2981.362 kb on + strand at 2981.368 kb on + strand at 2981.382 kb on - strand at 2981.382 kb on - strand at 2981.428 kb on + strand at 2981.538 kb on + strand, within HP15_2840 at 2981.545 kb on - strand, within HP15_2840 at 2981.575 kb on + strand, within HP15_2840
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 2,978,859 + HP15_2836 0.29 +2.0 2,978,867 - HP15_2836 0.31 +0.4 2,978,883 - HP15_2836 0.35 +1.4 2,978,962 + HP15_2836 0.56 +0.1 2,978,994 - HP15_2836 0.65 -0.3 2,979,211 - +1.6 2,979,278 + -0.3 2,979,313 - +0.0 2,979,366 - -0.3 2,979,470 + HP15_2837 0.47 -1.4 2,979,515 + HP15_2837 0.68 -0.7 2,979,523 - HP15_2837 0.71 -0.3 2,979,671 + -0.7 2,979,671 + +0.0 2,979,683 + -0.1 2,979,702 - -0.1 2,979,704 + -0.2 2,979,830 - -1.0 2,979,945 - HP15_2838 0.17 +0.4 2,980,237 + HP15_2838 0.55 -0.0 2,980,249 + HP15_2838 0.56 +2.4 2,980,331 + HP15_2838 0.67 +1.2 2,980,346 - HP15_2838 0.69 +2.1 2,980,388 - HP15_2838 0.74 +0.3 2,980,507 + HP15_2838 0.89 +1.0 2,980,527 + +0.7 2,980,538 + +0.5 2,980,546 - +1.0 2,980,577 + +0.2 2,980,582 + -1.0 2,980,590 - -0.5 2,980,693 - HP15_2839 0.12 -0.6 2,980,740 + HP15_2839 0.19 +1.6 2,980,748 - HP15_2839 0.20 -0.7 2,980,817 - HP15_2839 0.31 +0.0 2,980,867 + HP15_2839 0.39 +0.8 2,980,955 - HP15_2839 0.52 +0.7 2,981,141 - HP15_2839 0.81 +1.2 2,981,177 + HP15_2839 0.87 -0.2 2,981,211 + +1.7 2,981,219 - +0.6 2,981,221 - +2.6 2,981,221 - +1.7 2,981,231 + +0.0 2,981,349 - -0.5 2,981,356 + -1.0 2,981,362 + +1.3 2,981,368 + +0.8 2,981,382 - +1.2 2,981,382 - -0.1 2,981,428 + -0.2 2,981,538 + HP15_2840 0.11 +1.4 2,981,545 - HP15_2840 0.11 +0.0 2,981,575 + HP15_2840 0.14 -0.2
Or see this region's nucleotide sequence