Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2347 and HP15_2348 are separated by 139 nucleotides HP15_2348 and HP15_2349 are separated by 260 nucleotides HP15_2349 and HP15_2350 are separated by 17 nucleotides
HP15_2347: HP15_2347 - conserved hypothetical protein, at 2,470,636 to 2,471,508
_2347
HP15_2348: HP15_2348 - conserved hypothetical protein, at 2,471,648 to 2,472,628
_2348
HP15_2349: HP15_2349 - phosphoribosylaminoimidazole carboxylase catalytic subunit, at 2,472,889 to 2,473,416
_2349
HP15_2350: HP15_2350 - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 2,473,434 to 2,474,552
_2350
Position (kb)
2471
2472
2473 Strain fitness (log2 ratio)
-1
0
1 at 2470.923 kb on + strand, within HP15_2347 at 2471.124 kb on + strand, within HP15_2347 at 2471.132 kb on - strand, within HP15_2347 at 2471.138 kb on - strand, within HP15_2347 at 2471.149 kb on + strand, within HP15_2347 at 2471.157 kb on - strand, within HP15_2347 at 2471.173 kb on - strand, within HP15_2347 at 2471.198 kb on - strand, within HP15_2347 at 2471.198 kb on - strand, within HP15_2347 at 2471.314 kb on + strand, within HP15_2347 at 2471.314 kb on + strand, within HP15_2347 at 2471.322 kb on - strand, within HP15_2347 at 2471.322 kb on - strand, within HP15_2347 at 2471.331 kb on + strand, within HP15_2347 at 2471.493 kb on + strand at 2471.555 kb on - strand at 2471.583 kb on - strand at 2471.644 kb on - strand at 2471.663 kb on - strand at 2471.712 kb on - strand at 2471.740 kb on + strand at 2471.760 kb on - strand, within HP15_2348 at 2472.036 kb on + strand, within HP15_2348 at 2472.044 kb on + strand, within HP15_2348 at 2472.164 kb on + strand, within HP15_2348 at 2472.599 kb on - strand at 2472.668 kb on + strand at 2472.749 kb on - strand at 2473.394 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 2,470,923 + HP15_2347 0.33 +1.1 2,471,124 + HP15_2347 0.56 +1.3 2,471,132 - HP15_2347 0.57 -0.2 2,471,138 - HP15_2347 0.58 +1.1 2,471,149 + HP15_2347 0.59 -0.6 2,471,157 - HP15_2347 0.60 -0.3 2,471,173 - HP15_2347 0.62 -0.4 2,471,198 - HP15_2347 0.64 +1.6 2,471,198 - HP15_2347 0.64 +1.4 2,471,314 + HP15_2347 0.78 -0.5 2,471,314 + HP15_2347 0.78 -0.7 2,471,322 - HP15_2347 0.79 +0.3 2,471,322 - HP15_2347 0.79 +1.4 2,471,331 + HP15_2347 0.80 +1.4 2,471,493 + +0.8 2,471,555 - +1.7 2,471,583 - -0.1 2,471,644 - -0.8 2,471,663 - -0.9 2,471,712 - -1.0 2,471,740 + +0.1 2,471,760 - HP15_2348 0.11 -0.2 2,472,036 + HP15_2348 0.40 +0.2 2,472,044 + HP15_2348 0.40 -0.8 2,472,164 + HP15_2348 0.53 +0.5 2,472,599 - -1.0 2,472,668 + +0.8 2,472,749 - +0.2 2,473,394 + -1.5
Or see this region's nucleotide sequence