Strain Fitness in Marinobacter adhaerens HP15 around HP15_2348

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2347 and HP15_2348 are separated by 139 nucleotidesHP15_2348 and HP15_2349 are separated by 260 nucleotidesHP15_2349 and HP15_2350 are separated by 17 nucleotides HP15_2347: HP15_2347 - conserved hypothetical protein, at 2,470,636 to 2,471,508 _2347 HP15_2348: HP15_2348 - conserved hypothetical protein, at 2,471,648 to 2,472,628 _2348 HP15_2349: HP15_2349 - phosphoribosylaminoimidazole carboxylase catalytic subunit, at 2,472,889 to 2,473,416 _2349 HP15_2350: HP15_2350 - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 2,473,434 to 2,474,552 _2350 Position (kb) 2471 2472 2473Strain fitness (log2 ratio) -1 0 1at 2470.923 kb on + strand, within HP15_2347at 2471.124 kb on + strand, within HP15_2347at 2471.132 kb on - strand, within HP15_2347at 2471.138 kb on - strand, within HP15_2347at 2471.149 kb on + strand, within HP15_2347at 2471.157 kb on - strand, within HP15_2347at 2471.173 kb on - strand, within HP15_2347at 2471.198 kb on - strand, within HP15_2347at 2471.198 kb on - strand, within HP15_2347at 2471.314 kb on + strand, within HP15_2347at 2471.314 kb on + strand, within HP15_2347at 2471.322 kb on - strand, within HP15_2347at 2471.322 kb on - strand, within HP15_2347at 2471.331 kb on + strand, within HP15_2347at 2471.493 kb on + strandat 2471.555 kb on - strandat 2471.583 kb on - strandat 2471.644 kb on - strandat 2471.663 kb on - strandat 2471.712 kb on - strandat 2471.740 kb on + strandat 2471.760 kb on - strand, within HP15_2348at 2472.036 kb on + strand, within HP15_2348at 2472.044 kb on + strand, within HP15_2348at 2472.164 kb on + strand, within HP15_2348at 2472.599 kb on - strandat 2472.668 kb on + strandat 2472.749 kb on - strandat 2473.394 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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2,470,923 + HP15_2347 0.33 +1.1
2,471,124 + HP15_2347 0.56 +1.3
2,471,132 - HP15_2347 0.57 -0.2
2,471,138 - HP15_2347 0.58 +1.1
2,471,149 + HP15_2347 0.59 -0.6
2,471,157 - HP15_2347 0.60 -0.3
2,471,173 - HP15_2347 0.62 -0.4
2,471,198 - HP15_2347 0.64 +1.6
2,471,198 - HP15_2347 0.64 +1.4
2,471,314 + HP15_2347 0.78 -0.5
2,471,314 + HP15_2347 0.78 -0.7
2,471,322 - HP15_2347 0.79 +0.3
2,471,322 - HP15_2347 0.79 +1.4
2,471,331 + HP15_2347 0.80 +1.4
2,471,493 + +0.8
2,471,555 - +1.7
2,471,583 - -0.1
2,471,644 - -0.8
2,471,663 - -0.9
2,471,712 - -1.0
2,471,740 + +0.1
2,471,760 - HP15_2348 0.11 -0.2
2,472,036 + HP15_2348 0.40 +0.2
2,472,044 + HP15_2348 0.40 -0.8
2,472,164 + HP15_2348 0.53 +0.5
2,472,599 - -1.0
2,472,668 + +0.8
2,472,749 - +0.2
2,473,394 + -1.5

Or see this region's nucleotide sequence