Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c22880 and PGA1_c22890 are separated by 5 nucleotides PGA1_c22890 and PGA1_c22900 are separated by 3 nucleotides PGA1_c22900 and PGA1_c22910 overlap by 8 nucleotides
PGA1_c22880: PGA1_c22880 - Type IV secretion system proteins., at 2,370,962 to 2,371,741
_c22880
PGA1_c22890: PGA1_c22890 - putative type IV secretion system protein VirB8, at 2,371,747 to 2,372,397
_c22890
PGA1_c22900: PGA1_c22900 - putative type IV secretion system protein VirB9, at 2,372,401 to 2,373,096
_c22900
PGA1_c22910: PGA1_c22910 - putative type IV secretion system protein VirB10, at 2,373,089 to 2,374,402
_c22910
Position (kb)
2372
2373
2374 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2371.493 kb on - strand, within PGA1_c22880 at 2371.523 kb on - strand, within PGA1_c22880 at 2371.650 kb on + strand, within PGA1_c22880 at 2371.663 kb on - strand, within PGA1_c22880 at 2371.720 kb on + strand at 2371.744 kb on + strand at 2371.744 kb on + strand at 2371.760 kb on - strand at 2371.790 kb on - strand at 2371.790 kb on - strand at 2371.790 kb on - strand at 2371.879 kb on + strand, within PGA1_c22890 at 2371.941 kb on - strand, within PGA1_c22890 at 2371.944 kb on + strand, within PGA1_c22890 at 2372.012 kb on - strand, within PGA1_c22890 at 2372.041 kb on - strand, within PGA1_c22890 at 2372.116 kb on + strand, within PGA1_c22890 at 2372.116 kb on + strand, within PGA1_c22890 at 2372.124 kb on - strand, within PGA1_c22890 at 2372.129 kb on + strand, within PGA1_c22890 at 2372.216 kb on + strand, within PGA1_c22890 at 2372.352 kb on - strand at 2372.398 kb on + strand at 2372.406 kb on - strand at 2372.526 kb on + strand, within PGA1_c22900 at 2372.535 kb on + strand, within PGA1_c22900 at 2372.540 kb on + strand, within PGA1_c22900 at 2372.545 kb on + strand, within PGA1_c22900 at 2372.553 kb on - strand, within PGA1_c22900 at 2372.553 kb on - strand, within PGA1_c22900 at 2372.572 kb on - strand, within PGA1_c22900 at 2372.655 kb on - strand, within PGA1_c22900 at 2372.686 kb on + strand, within PGA1_c22900 at 2372.693 kb on + strand, within PGA1_c22900 at 2372.780 kb on + strand, within PGA1_c22900 at 2372.780 kb on + strand, within PGA1_c22900 at 2372.788 kb on - strand, within PGA1_c22900 at 2372.793 kb on + strand, within PGA1_c22900 at 2372.800 kb on - strand, within PGA1_c22900 at 2372.901 kb on - strand, within PGA1_c22900 at 2373.031 kb on + strand at 2373.091 kb on - strand at 2373.091 kb on - strand at 2373.206 kb on - strand at 2373.306 kb on + strand, within PGA1_c22910 at 2373.314 kb on - strand, within PGA1_c22910 at 2373.321 kb on - strand, within PGA1_c22910 at 2373.478 kb on - strand, within PGA1_c22910 at 2373.609 kb on - strand, within PGA1_c22910 at 2373.626 kb on - strand, within PGA1_c22910 at 2373.698 kb on + strand, within PGA1_c22910 at 2373.821 kb on - strand, within PGA1_c22910 at 2373.821 kb on - strand, within PGA1_c22910 at 2373.896 kb on + strand, within PGA1_c22910 at 2373.937 kb on - strand, within PGA1_c22910 at 2373.937 kb on - strand, within PGA1_c22910 at 2373.937 kb on - strand, within PGA1_c22910 at 2373.999 kb on + strand, within PGA1_c22910 at 2374.004 kb on + strand, within PGA1_c22910 at 2374.028 kb on + strand, within PGA1_c22910
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 2,371,493 - PGA1_c22880 0.68 -0.1 2,371,523 - PGA1_c22880 0.72 -2.2 2,371,650 + PGA1_c22880 0.88 +0.3 2,371,663 - PGA1_c22880 0.90 -0.4 2,371,720 + -0.5 2,371,744 + -1.5 2,371,744 + -0.5 2,371,760 - -2.5 2,371,790 - +0.1 2,371,790 - +2.1 2,371,790 - +0.5 2,371,879 + PGA1_c22890 0.20 -0.2 2,371,941 - PGA1_c22890 0.30 -0.4 2,371,944 + PGA1_c22890 0.30 -0.5 2,372,012 - PGA1_c22890 0.41 +0.2 2,372,041 - PGA1_c22890 0.45 +1.1 2,372,116 + PGA1_c22890 0.57 -1.5 2,372,116 + PGA1_c22890 0.57 -0.1 2,372,124 - PGA1_c22890 0.58 -0.2 2,372,129 + PGA1_c22890 0.59 +0.9 2,372,216 + PGA1_c22890 0.72 +0.8 2,372,352 - +1.8 2,372,398 + +0.2 2,372,406 - +0.3 2,372,526 + PGA1_c22900 0.18 +1.8 2,372,535 + PGA1_c22900 0.19 +0.7 2,372,540 + PGA1_c22900 0.20 +2.1 2,372,545 + PGA1_c22900 0.21 -0.7 2,372,553 - PGA1_c22900 0.22 -1.1 2,372,553 - PGA1_c22900 0.22 -0.1 2,372,572 - PGA1_c22900 0.25 +2.3 2,372,655 - PGA1_c22900 0.36 +1.5 2,372,686 + PGA1_c22900 0.41 +0.5 2,372,693 + PGA1_c22900 0.42 -0.2 2,372,780 + PGA1_c22900 0.54 +0.5 2,372,780 + PGA1_c22900 0.54 +0.0 2,372,788 - PGA1_c22900 0.56 +0.5 2,372,793 + PGA1_c22900 0.56 +0.5 2,372,800 - PGA1_c22900 0.57 -0.7 2,372,901 - PGA1_c22900 0.72 -1.8 2,373,031 + -0.5 2,373,091 - +0.4 2,373,091 - -0.2 2,373,206 - +0.5 2,373,306 + PGA1_c22910 0.17 -0.3 2,373,314 - PGA1_c22910 0.17 +0.6 2,373,321 - PGA1_c22910 0.18 +0.3 2,373,478 - PGA1_c22910 0.30 +0.6 2,373,609 - PGA1_c22910 0.40 +0.7 2,373,626 - PGA1_c22910 0.41 +0.2 2,373,698 + PGA1_c22910 0.46 -0.7 2,373,821 - PGA1_c22910 0.56 +1.7 2,373,821 - PGA1_c22910 0.56 +0.1 2,373,896 + PGA1_c22910 0.61 +0.6 2,373,937 - PGA1_c22910 0.65 +1.2 2,373,937 - PGA1_c22910 0.65 +0.0 2,373,937 - PGA1_c22910 0.65 +0.1 2,373,999 + PGA1_c22910 0.69 -0.1 2,374,004 + PGA1_c22910 0.70 -0.1 2,374,028 + PGA1_c22910 0.71 +0.8
Or see this region's nucleotide sequence