Strain Fitness in Marinobacter adhaerens HP15 around HP15_2195

Experiment: L-Phenylalanine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2194 and HP15_2195 overlap by 4 nucleotidesHP15_2195 and HP15_2196 are separated by 90 nucleotides HP15_2194: HP15_2194 - amino acid ABC transporter, permease protein, at 2,310,973 to 2,312,061 _2194 HP15_2195: HP15_2195 - amino acid ABC transporter, permease protein, at 2,312,058 to 2,313,245 _2195 HP15_2196: HP15_2196 - glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein, at 2,313,336 to 2,314,379 _2196 Position (kb) 2312 2313 2314Strain fitness (log2 ratio) -2 -1 0 1at 2311.117 kb on - strand, within HP15_2194at 2311.122 kb on - strand, within HP15_2194at 2311.122 kb on - strand, within HP15_2194at 2311.124 kb on + strand, within HP15_2194at 2311.124 kb on + strand, within HP15_2194at 2311.132 kb on - strand, within HP15_2194at 2311.177 kb on - strand, within HP15_2194at 2311.261 kb on + strand, within HP15_2194at 2311.356 kb on + strand, within HP15_2194at 2311.358 kb on - strand, within HP15_2194at 2311.364 kb on - strand, within HP15_2194at 2311.364 kb on - strand, within HP15_2194at 2311.364 kb on - strand, within HP15_2194at 2311.364 kb on - strand, within HP15_2194at 2311.364 kb on - strand, within HP15_2194at 2311.593 kb on + strand, within HP15_2194at 2311.615 kb on + strand, within HP15_2194at 2311.703 kb on - strand, within HP15_2194at 2311.737 kb on - strand, within HP15_2194at 2311.857 kb on + strand, within HP15_2194at 2311.923 kb on + strand, within HP15_2194at 2311.923 kb on + strand, within HP15_2194at 2311.923 kb on + strand, within HP15_2194at 2311.931 kb on - strand, within HP15_2194at 2311.931 kb on - strand, within HP15_2194at 2311.931 kb on - strand, within HP15_2194at 2311.948 kb on + strand, within HP15_2194at 2311.957 kb on - strandat 2311.979 kb on - strandat 2312.066 kb on - strandat 2312.298 kb on + strand, within HP15_2195at 2312.333 kb on - strand, within HP15_2195at 2312.343 kb on + strand, within HP15_2195at 2312.351 kb on - strand, within HP15_2195at 2312.358 kb on - strand, within HP15_2195at 2312.366 kb on - strand, within HP15_2195at 2312.446 kb on - strand, within HP15_2195at 2312.453 kb on - strand, within HP15_2195at 2312.857 kb on + strand, within HP15_2195at 2312.973 kb on + strand, within HP15_2195at 2313.144 kb on - strandat 2313.144 kb on - strandat 2313.202 kb on + strandat 2313.210 kb on - strandat 2313.210 kb on - strandat 2313.269 kb on + strandat 2313.335 kb on - strandat 2313.381 kb on - strandat 2313.508 kb on + strand, within HP15_2196at 2313.583 kb on - strand, within HP15_2196at 2313.604 kb on + strand, within HP15_2196at 2313.604 kb on - strand, within HP15_2196at 2313.702 kb on + strand, within HP15_2196at 2313.779 kb on - strand, within HP15_2196at 2313.801 kb on + strand, within HP15_2196at 2313.803 kb on + strand, within HP15_2196at 2313.803 kb on + strand, within HP15_2196at 2313.823 kb on - strand, within HP15_2196at 2313.932 kb on + strand, within HP15_2196at 2313.980 kb on - strand, within HP15_2196at 2314.029 kb on + strand, within HP15_2196at 2314.105 kb on - strand, within HP15_2196at 2314.105 kb on - strand, within HP15_2196

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
remove
2,311,117 - HP15_2194 0.13 -0.2
2,311,122 - HP15_2194 0.14 +0.5
2,311,122 - HP15_2194 0.14 -0.3
2,311,124 + HP15_2194 0.14 -0.3
2,311,124 + HP15_2194 0.14 +0.7
2,311,132 - HP15_2194 0.15 -0.6
2,311,177 - HP15_2194 0.19 -1.1
2,311,261 + HP15_2194 0.26 +1.1
2,311,356 + HP15_2194 0.35 -1.6
2,311,358 - HP15_2194 0.35 +1.0
2,311,364 - HP15_2194 0.36 +0.8
2,311,364 - HP15_2194 0.36 +0.6
2,311,364 - HP15_2194 0.36 -0.3
2,311,364 - HP15_2194 0.36 -0.8
2,311,364 - HP15_2194 0.36 -0.2
2,311,593 + HP15_2194 0.57 -0.8
2,311,615 + HP15_2194 0.59 -1.9
2,311,703 - HP15_2194 0.67 +1.4
2,311,737 - HP15_2194 0.70 +1.4
2,311,857 + HP15_2194 0.81 -1.1
2,311,923 + HP15_2194 0.87 +1.2
2,311,923 + HP15_2194 0.87 -0.6
2,311,923 + HP15_2194 0.87 +0.4
2,311,931 - HP15_2194 0.88 -0.1
2,311,931 - HP15_2194 0.88 -1.3
2,311,931 - HP15_2194 0.88 +0.4
2,311,948 + HP15_2194 0.90 -0.2
2,311,957 - +0.4
2,311,979 - -0.3
2,312,066 - +0.9
2,312,298 + HP15_2195 0.20 -0.4
2,312,333 - HP15_2195 0.23 -0.2
2,312,343 + HP15_2195 0.24 +1.6
2,312,351 - HP15_2195 0.25 +1.2
2,312,358 - HP15_2195 0.25 +1.3
2,312,366 - HP15_2195 0.26 -1.6
2,312,446 - HP15_2195 0.33 -0.4
2,312,453 - HP15_2195 0.33 +0.1
2,312,857 + HP15_2195 0.67 -0.3
2,312,973 + HP15_2195 0.77 -0.1
2,313,144 - +1.0
2,313,144 - -0.5
2,313,202 + +0.1
2,313,210 - +0.1
2,313,210 - +0.6
2,313,269 + -2.0
2,313,335 - +1.3
2,313,381 - +0.1
2,313,508 + HP15_2196 0.16 +0.4
2,313,583 - HP15_2196 0.24 -0.7
2,313,604 + HP15_2196 0.26 -0.8
2,313,604 - HP15_2196 0.26 -0.3
2,313,702 + HP15_2196 0.35 -0.2
2,313,779 - HP15_2196 0.42 -0.4
2,313,801 + HP15_2196 0.45 -0.7
2,313,803 + HP15_2196 0.45 +0.7
2,313,803 + HP15_2196 0.45 +1.2
2,313,823 - HP15_2196 0.47 +1.4
2,313,932 + HP15_2196 0.57 +0.9
2,313,980 - HP15_2196 0.62 -0.6
2,314,029 + HP15_2196 0.66 -0.1
2,314,105 - HP15_2196 0.74 -0.3
2,314,105 - HP15_2196 0.74 -0.3

Or see this region's nucleotide sequence