Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_187 and HP15_188 are separated by 129 nucleotides HP15_188 and HP15_189 are separated by 15 nucleotides HP15_189 and HP15_190 are separated by 240 nucleotides HP15_190 and HP15_191 are separated by 290 nucleotides
HP15_187: HP15_187 - conserved hypothetical protein, secreted, at 177,759 to 178,142
_187
HP15_188: HP15_188 - plasmid pTOM9 ORF1-like protein, at 178,272 to 178,925
_188
HP15_189: HP15_189 - plasmidpTOM9-like protein, at 178,941 to 179,636
_189
HP15_190: HP15_190 - protein containing methyltransferase type 12 domain, at 179,877 to 180,323
_190
HP15_191: HP15_191 - Hg(II)--responsive transcriptional regulator, at 180,614 to 181,048
_191
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.962 kb on + strand, within HP15_187 at 177.964 kb on + strand, within HP15_187 at 178.016 kb on + strand, within HP15_187 at 178.051 kb on + strand, within HP15_187 at 178.181 kb on - strand at 178.253 kb on + strand at 178.283 kb on - strand at 178.320 kb on - strand at 178.360 kb on + strand, within HP15_188 at 178.496 kb on - strand, within HP15_188 at 178.583 kb on + strand, within HP15_188 at 178.590 kb on + strand, within HP15_188 at 178.629 kb on - strand, within HP15_188 at 178.678 kb on + strand, within HP15_188 at 178.686 kb on - strand, within HP15_188 at 178.734 kb on - strand, within HP15_188 at 178.747 kb on + strand, within HP15_188 at 178.863 kb on + strand at 178.863 kb on + strand at 178.863 kb on + strand at 178.956 kb on + strand at 179.036 kb on + strand, within HP15_189 at 179.076 kb on - strand, within HP15_189 at 179.163 kb on + strand, within HP15_189 at 179.176 kb on - strand, within HP15_189 at 179.183 kb on + strand, within HP15_189 at 179.191 kb on - strand, within HP15_189 at 179.191 kb on - strand, within HP15_189 at 179.285 kb on + strand, within HP15_189 at 179.293 kb on - strand, within HP15_189 at 179.418 kb on + strand, within HP15_189 at 179.424 kb on - strand, within HP15_189 at 179.424 kb on - strand, within HP15_189 at 179.441 kb on + strand, within HP15_189 at 179.537 kb on - strand, within HP15_189 at 179.592 kb on - strand at 179.609 kb on - strand at 179.648 kb on - strand at 179.700 kb on - strand at 179.769 kb on + strand at 179.787 kb on - strand at 179.834 kb on - strand at 179.901 kb on + strand at 179.953 kb on + strand, within HP15_190 at 179.954 kb on - strand, within HP15_190 at 180.046 kb on - strand, within HP15_190 at 180.208 kb on - strand, within HP15_190 at 180.215 kb on + strand, within HP15_190 at 180.222 kb on - strand, within HP15_190 at 180.237 kb on + strand, within HP15_190 at 180.296 kb on + strand at 180.296 kb on + strand at 180.316 kb on - strand at 180.322 kb on + strand at 180.504 kb on - strand at 180.594 kb on - strand at 180.605 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 177,962 + HP15_187 0.53 +1.7 177,964 + HP15_187 0.53 +1.1 178,016 + HP15_187 0.67 -0.5 178,051 + HP15_187 0.76 -0.4 178,181 - -0.4 178,253 + +0.1 178,283 - +1.6 178,320 - +0.1 178,360 + HP15_188 0.13 -0.2 178,496 - HP15_188 0.34 +0.0 178,583 + HP15_188 0.48 +1.5 178,590 + HP15_188 0.49 +1.3 178,629 - HP15_188 0.55 -0.3 178,678 + HP15_188 0.62 +1.0 178,686 - HP15_188 0.63 +1.9 178,734 - HP15_188 0.71 +0.8 178,747 + HP15_188 0.73 +0.9 178,863 + +1.5 178,863 + +0.1 178,863 + +1.4 178,956 + +1.0 179,036 + HP15_189 0.14 -0.2 179,076 - HP15_189 0.19 -1.0 179,163 + HP15_189 0.32 +0.4 179,176 - HP15_189 0.34 +0.9 179,183 + HP15_189 0.35 -0.9 179,191 - HP15_189 0.36 -0.8 179,191 - HP15_189 0.36 +1.0 179,285 + HP15_189 0.49 -0.9 179,293 - HP15_189 0.51 +0.4 179,418 + HP15_189 0.69 +0.1 179,424 - HP15_189 0.69 -0.6 179,424 - HP15_189 0.69 +0.8 179,441 + HP15_189 0.72 -0.5 179,537 - HP15_189 0.86 -0.9 179,592 - -0.6 179,609 - +0.1 179,648 - +2.5 179,700 - -1.5 179,769 + +1.8 179,787 - +0.5 179,834 - +0.4 179,901 + -0.6 179,953 + HP15_190 0.17 -0.5 179,954 - HP15_190 0.17 +1.0 180,046 - HP15_190 0.38 -1.2 180,208 - HP15_190 0.74 -0.2 180,215 + HP15_190 0.76 -1.2 180,222 - HP15_190 0.77 +2.2 180,237 + HP15_190 0.81 -1.3 180,296 + -0.4 180,296 + -1.9 180,316 - +1.4 180,322 + -0.2 180,504 - -0.1 180,594 - +1.3 180,605 + -0.6
Or see this region's nucleotide sequence