Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01900 and PGA1_c01910 are separated by 146 nucleotides PGA1_c01910 and PGA1_c01920 are separated by 190 nucleotides PGA1_c01920 and PGA1_c01930 are separated by 2 nucleotides
PGA1_c01900: PGA1_c01900 - DNA-directed RNA polymerase subunit alpha, at 172,906 to 173,922
_c01900
PGA1_c01910: PGA1_c01910 - 50S ribosomal protein L17, at 174,069 to 174,491
_c01910
PGA1_c01920: PGA1_c01920 - protease DegQ, at 174,682 to 176,079
_c01920
PGA1_c01930: PGA1_c01930 - replication-associated recombination protein A, at 176,082 to 177,404
_c01930
Position (kb) 174
175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.929 kb on + strand at 174.654 kb on - strand at 174.694 kb on + strand at 174.702 kb on - strand at 174.714 kb on + strand at 174.722 kb on - strand at 174.742 kb on - strand at 174.742 kb on - strand at 174.742 kb on - strand at 174.742 kb on - strand at 174.747 kb on - strand at 174.821 kb on + strand at 174.874 kb on + strand, within PGA1_c01920 at 174.924 kb on + strand, within PGA1_c01920 at 174.926 kb on - strand, within PGA1_c01920 at 174.933 kb on - strand, within PGA1_c01920 at 174.933 kb on - strand, within PGA1_c01920 at 174.937 kb on + strand, within PGA1_c01920 at 174.945 kb on - strand, within PGA1_c01920 at 174.947 kb on + strand, within PGA1_c01920 at 174.953 kb on + strand, within PGA1_c01920 at 174.958 kb on + strand, within PGA1_c01920 at 174.958 kb on + strand, within PGA1_c01920 at 174.958 kb on + strand, within PGA1_c01920 at 174.958 kb on + strand, within PGA1_c01920 at 174.961 kb on - strand, within PGA1_c01920 at 174.961 kb on - strand, within PGA1_c01920 at 175.022 kb on - strand, within PGA1_c01920 at 175.022 kb on - strand, within PGA1_c01920 at 175.117 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.133 kb on + strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.141 kb on - strand, within PGA1_c01920 at 175.188 kb on + strand, within PGA1_c01920 at 175.259 kb on + strand, within PGA1_c01920 at 175.266 kb on - strand, within PGA1_c01920 at 175.288 kb on - strand, within PGA1_c01920 at 175.310 kb on - strand, within PGA1_c01920 at 175.487 kb on - strand, within PGA1_c01920 at 175.498 kb on - strand, within PGA1_c01920 at 175.529 kb on + strand, within PGA1_c01920 at 175.702 kb on + strand, within PGA1_c01920 at 175.737 kb on + strand, within PGA1_c01920 at 175.738 kb on - strand, within PGA1_c01920 at 175.793 kb on + strand, within PGA1_c01920 at 175.793 kb on + strand, within PGA1_c01920 at 175.801 kb on - strand, within PGA1_c01920 at 175.870 kb on + strand, within PGA1_c01920 at 175.885 kb on - strand, within PGA1_c01920 at 175.928 kb on + strand, within PGA1_c01920 at 175.982 kb on + strand at 176.042 kb on + strand at 176.140 kb on - strand at 176.247 kb on + strand, within PGA1_c01930 at 176.336 kb on - strand, within PGA1_c01930 at 176.336 kb on - strand, within PGA1_c01930 at 176.345 kb on + strand, within PGA1_c01930 at 176.431 kb on - strand, within PGA1_c01930 at 176.506 kb on - strand, within PGA1_c01930 at 176.538 kb on - strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.562 kb on + strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.570 kb on - strand, within PGA1_c01930 at 176.579 kb on + strand, within PGA1_c01930 at 176.651 kb on - strand, within PGA1_c01930 at 176.656 kb on + strand, within PGA1_c01930 at 176.789 kb on - strand, within PGA1_c01930 at 176.861 kb on + strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.869 kb on - strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.878 kb on + strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.886 kb on - strand, within PGA1_c01930 at 176.900 kb on + strand, within PGA1_c01930 at 177.031 kb on - strand, within PGA1_c01930 at 177.034 kb on + strand, within PGA1_c01930 at 177.074 kb on + strand, within PGA1_c01930
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 173,929 + +0.2 174,654 - -2.3 174,694 + +1.5 174,702 - +2.2 174,714 + -1.7 174,722 - +0.8 174,742 - -1.8 174,742 - -2.8 174,742 - -1.6 174,742 - -0.2 174,747 - -0.9 174,821 + -2.9 174,874 + PGA1_c01920 0.14 -0.6 174,924 + PGA1_c01920 0.17 +0.6 174,926 - PGA1_c01920 0.17 -0.1 174,933 - PGA1_c01920 0.18 -0.4 174,933 - PGA1_c01920 0.18 +1.1 174,937 + PGA1_c01920 0.18 +0.4 174,945 - PGA1_c01920 0.19 -1.1 174,947 + PGA1_c01920 0.19 -1.4 174,953 + PGA1_c01920 0.19 -0.4 174,958 + PGA1_c01920 0.20 -2.3 174,958 + PGA1_c01920 0.20 -1.4 174,958 + PGA1_c01920 0.20 -0.6 174,958 + PGA1_c01920 0.20 -1.5 174,961 - PGA1_c01920 0.20 +1.1 174,961 - PGA1_c01920 0.20 +2.0 175,022 - PGA1_c01920 0.24 -0.6 175,022 - PGA1_c01920 0.24 +0.6 175,117 + PGA1_c01920 0.31 -0.2 175,133 + PGA1_c01920 0.32 -1.2 175,133 + PGA1_c01920 0.32 -0.8 175,133 + PGA1_c01920 0.32 -0.0 175,133 + PGA1_c01920 0.32 -2.2 175,133 + PGA1_c01920 0.32 -1.7 175,133 + PGA1_c01920 0.32 -1.9 175,133 + PGA1_c01920 0.32 -1.6 175,141 - PGA1_c01920 0.33 -0.8 175,141 - PGA1_c01920 0.33 -0.6 175,141 - PGA1_c01920 0.33 -0.3 175,141 - PGA1_c01920 0.33 +0.1 175,141 - PGA1_c01920 0.33 -1.7 175,141 - PGA1_c01920 0.33 +0.6 175,141 - PGA1_c01920 0.33 -0.5 175,141 - PGA1_c01920 0.33 -1.4 175,141 - PGA1_c01920 0.33 +0.6 175,188 + PGA1_c01920 0.36 -2.5 175,259 + PGA1_c01920 0.41 -1.4 175,266 - PGA1_c01920 0.42 -0.9 175,288 - PGA1_c01920 0.43 -1.4 175,310 - PGA1_c01920 0.45 -0.4 175,487 - PGA1_c01920 0.58 -0.0 175,498 - PGA1_c01920 0.58 -0.7 175,529 + PGA1_c01920 0.61 -0.3 175,702 + PGA1_c01920 0.73 -0.7 175,737 + PGA1_c01920 0.75 -0.3 175,738 - PGA1_c01920 0.76 +0.3 175,793 + PGA1_c01920 0.79 -0.9 175,793 + PGA1_c01920 0.79 -1.9 175,801 - PGA1_c01920 0.80 -0.8 175,870 + PGA1_c01920 0.85 -0.4 175,885 - PGA1_c01920 0.86 -0.9 175,928 + PGA1_c01920 0.89 -0.9 175,982 + +1.3 176,042 + -0.3 176,140 - -0.0 176,247 + PGA1_c01930 0.12 -0.1 176,336 - PGA1_c01930 0.19 -1.4 176,336 - PGA1_c01930 0.19 -1.4 176,345 + PGA1_c01930 0.20 +1.5 176,431 - PGA1_c01930 0.26 +0.1 176,506 - PGA1_c01930 0.32 -0.1 176,538 - PGA1_c01930 0.34 +1.3 176,562 + PGA1_c01930 0.36 -0.5 176,562 + PGA1_c01930 0.36 -0.5 176,562 + PGA1_c01930 0.36 +1.2 176,562 + PGA1_c01930 0.36 -0.4 176,562 + PGA1_c01930 0.36 -0.1 176,562 + PGA1_c01930 0.36 +0.0 176,570 - PGA1_c01930 0.37 -0.4 176,570 - PGA1_c01930 0.37 +0.1 176,579 + PGA1_c01930 0.38 +0.2 176,651 - PGA1_c01930 0.43 -0.6 176,656 + PGA1_c01930 0.43 -1.8 176,789 - PGA1_c01930 0.53 +0.6 176,861 + PGA1_c01930 0.59 -0.5 176,869 - PGA1_c01930 0.59 +2.1 176,869 - PGA1_c01930 0.59 -0.5 176,869 - PGA1_c01930 0.59 +0.6 176,869 - PGA1_c01930 0.59 -0.1 176,869 - PGA1_c01930 0.59 +0.2 176,869 - PGA1_c01930 0.59 -0.2 176,869 - PGA1_c01930 0.59 +0.4 176,878 + PGA1_c01930 0.60 +0.1 176,878 + PGA1_c01930 0.60 +0.4 176,878 + PGA1_c01930 0.60 -0.9 176,886 - PGA1_c01930 0.61 -2.5 176,886 - PGA1_c01930 0.61 +0.4 176,900 + PGA1_c01930 0.62 +0.6 177,031 - PGA1_c01930 0.72 -0.4 177,034 + PGA1_c01930 0.72 +0.6 177,074 + PGA1_c01930 0.75 -0.2
Or see this region's nucleotide sequence