Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_186 and HP15_187 are separated by 163 nucleotides HP15_187 and HP15_188 are separated by 129 nucleotides HP15_188 and HP15_189 are separated by 15 nucleotides
HP15_186: HP15_186 - two-component sensor, at 176,240 to 177,595
_186
HP15_187: HP15_187 - conserved hypothetical protein, secreted, at 177,759 to 178,142
_187
HP15_188: HP15_188 - plasmid pTOM9 ORF1-like protein, at 178,272 to 178,925
_188
HP15_189: HP15_189 - plasmidpTOM9-like protein, at 178,941 to 179,636
_189
Position (kb) 177
178
179 Strain fitness (log2 ratio) -1
0
1
2 at 176.764 kb on - strand, within HP15_186 at 176.787 kb on + strand, within HP15_186 at 177.136 kb on - strand, within HP15_186 at 177.178 kb on + strand, within HP15_186 at 177.221 kb on - strand, within HP15_186 at 177.235 kb on + strand, within HP15_186 at 177.293 kb on + strand, within HP15_186 at 177.293 kb on + strand, within HP15_186 at 177.293 kb on + strand, within HP15_186 at 177.323 kb on - strand, within HP15_186 at 177.325 kb on + strand, within HP15_186 at 177.335 kb on - strand, within HP15_186 at 177.337 kb on - strand, within HP15_186 at 177.352 kb on + strand, within HP15_186 at 177.360 kb on - strand, within HP15_186 at 177.360 kb on - strand, within HP15_186 at 177.362 kb on - strand, within HP15_186 at 177.465 kb on + strand at 177.473 kb on - strand at 177.473 kb on - strand at 177.499 kb on + strand at 177.563 kb on + strand at 177.604 kb on + strand at 177.651 kb on + strand at 177.655 kb on - strand at 177.686 kb on - strand at 177.693 kb on + strand at 177.693 kb on + strand at 177.695 kb on - strand at 177.701 kb on - strand at 177.713 kb on - strand at 177.720 kb on - strand at 177.720 kb on - strand at 177.720 kb on - strand at 177.862 kb on + strand, within HP15_187 at 177.868 kb on - strand, within HP15_187 at 177.916 kb on + strand, within HP15_187 at 177.922 kb on - strand, within HP15_187 at 177.924 kb on - strand, within HP15_187 at 177.962 kb on + strand, within HP15_187 at 177.964 kb on + strand, within HP15_187 at 178.016 kb on + strand, within HP15_187 at 178.051 kb on + strand, within HP15_187 at 178.181 kb on - strand at 178.253 kb on + strand at 178.283 kb on - strand at 178.320 kb on - strand at 178.360 kb on + strand, within HP15_188 at 178.496 kb on - strand, within HP15_188 at 178.583 kb on + strand, within HP15_188 at 178.590 kb on + strand, within HP15_188 at 178.629 kb on - strand, within HP15_188 at 178.678 kb on + strand, within HP15_188 at 178.686 kb on - strand, within HP15_188 at 178.734 kb on - strand, within HP15_188 at 178.747 kb on + strand, within HP15_188 at 178.863 kb on + strand at 178.863 kb on + strand at 178.863 kb on + strand at 178.956 kb on + strand at 179.036 kb on + strand, within HP15_189 at 179.076 kb on - strand, within HP15_189
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 176,764 - HP15_186 0.39 -0.5 176,787 + HP15_186 0.40 -0.2 177,136 - HP15_186 0.66 +1.7 177,178 + HP15_186 0.69 +1.5 177,221 - HP15_186 0.72 -0.3 177,235 + HP15_186 0.73 -0.9 177,293 + HP15_186 0.78 +1.5 177,293 + HP15_186 0.78 -0.1 177,293 + HP15_186 0.78 -0.2 177,323 - HP15_186 0.80 -0.6 177,325 + HP15_186 0.80 +1.2 177,335 - HP15_186 0.81 -0.1 177,337 - HP15_186 0.81 -0.6 177,352 + HP15_186 0.82 -0.3 177,360 - HP15_186 0.83 +1.5 177,360 - HP15_186 0.83 +0.8 177,362 - HP15_186 0.83 -0.8 177,465 + -0.3 177,473 - +2.4 177,473 - -0.6 177,499 + +1.3 177,563 + -0.6 177,604 + +0.0 177,651 + -0.6 177,655 - +1.4 177,686 - +0.3 177,693 + -0.8 177,693 + -1.4 177,695 - -0.4 177,701 - +1.3 177,713 - -0.3 177,720 - +1.4 177,720 - +0.0 177,720 - -0.5 177,862 + HP15_187 0.27 -0.2 177,868 - HP15_187 0.28 -0.2 177,916 + HP15_187 0.41 +0.1 177,922 - HP15_187 0.42 -0.1 177,924 - HP15_187 0.43 -1.5 177,962 + HP15_187 0.53 +1.7 177,964 + HP15_187 0.53 +1.1 178,016 + HP15_187 0.67 -0.5 178,051 + HP15_187 0.76 -0.4 178,181 - -0.4 178,253 + +0.1 178,283 - +1.6 178,320 - +0.1 178,360 + HP15_188 0.13 -0.2 178,496 - HP15_188 0.34 +0.0 178,583 + HP15_188 0.48 +1.5 178,590 + HP15_188 0.49 +1.3 178,629 - HP15_188 0.55 -0.3 178,678 + HP15_188 0.62 +1.0 178,686 - HP15_188 0.63 +1.9 178,734 - HP15_188 0.71 +0.8 178,747 + HP15_188 0.73 +0.9 178,863 + +1.5 178,863 + +0.1 178,863 + +1.4 178,956 + +1.0 179,036 + HP15_189 0.14 -0.2 179,076 - HP15_189 0.19 -1.0
Or see this region's nucleotide sequence