Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1644 and HP15_1645 are separated by 5 nucleotides HP15_1645 and HP15_1646 overlap by 14 nucleotides HP15_1646 and HP15_1647 are separated by 12 nucleotides HP15_1647 and HP15_1648 are separated by 51 nucleotides HP15_1648 and HP15_1649 are separated by 84 nucleotides
HP15_1644: HP15_1644 - signal peptide protein-like protein, at 1,742,675 to 1,742,974
_1644
HP15_1645: HP15_1645 - UPF0276 protein containing DUF692, at 1,742,980 to 1,743,891
_1645
HP15_1646: HP15_1646 - conserved hypothetical protein, at 1,743,878 to 1,744,627
_1646
HP15_1647: HP15_1647 - DoxX, at 1,744,640 to 1,745,095
_1647
HP15_1648: HP15_1648 - protein containing thioredoxin domain, at 1,745,147 to 1,745,542
_1648
HP15_1649: HP15_1649 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,745,627 to 1,747,027
_1649
Position (kb)
1743
1744
1745 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1743.045 kb on + strand at 1743.053 kb on - strand at 1743.213 kb on - strand, within HP15_1645 at 1743.214 kb on - strand, within HP15_1645 at 1743.267 kb on - strand, within HP15_1645 at 1743.269 kb on + strand, within HP15_1645 at 1743.287 kb on + strand, within HP15_1645 at 1743.406 kb on - strand, within HP15_1645 at 1743.447 kb on + strand, within HP15_1645 at 1743.530 kb on + strand, within HP15_1645 at 1743.827 kb on - strand at 1743.834 kb on + strand at 1743.844 kb on + strand at 1743.856 kb on + strand at 1743.866 kb on - strand at 1743.875 kb on + strand at 1743.936 kb on + strand at 1743.959 kb on - strand, within HP15_1646 at 1744.131 kb on + strand, within HP15_1646 at 1744.139 kb on - strand, within HP15_1646 at 1744.192 kb on + strand, within HP15_1646 at 1744.222 kb on + strand, within HP15_1646 at 1744.325 kb on - strand, within HP15_1646 at 1744.364 kb on + strand, within HP15_1646 at 1744.380 kb on + strand, within HP15_1646 at 1744.388 kb on - strand, within HP15_1646 at 1744.413 kb on + strand, within HP15_1646 at 1744.829 kb on - strand, within HP15_1647 at 1745.040 kb on + strand, within HP15_1647 at 1745.040 kb on + strand, within HP15_1647 at 1745.090 kb on + strand at 1745.090 kb on + strand at 1745.104 kb on + strand at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.297 kb on + strand, within HP15_1648 at 1745.300 kb on - strand, within HP15_1648 at 1745.300 kb on - strand, within HP15_1648 at 1745.362 kb on + strand, within HP15_1648 at 1745.367 kb on + strand, within HP15_1648 at 1745.419 kb on - strand, within HP15_1648 at 1745.489 kb on + strand, within HP15_1648 at 1745.626 kb on - strand at 1745.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 1,743,045 + +0.2 1,743,053 - +0.1 1,743,213 - HP15_1645 0.26 -2.4 1,743,214 - HP15_1645 0.26 -0.2 1,743,267 - HP15_1645 0.31 +3.2 1,743,269 + HP15_1645 0.32 +1.4 1,743,287 + HP15_1645 0.34 +0.4 1,743,406 - HP15_1645 0.47 +1.1 1,743,447 + HP15_1645 0.51 -0.7 1,743,530 + HP15_1645 0.60 +0.1 1,743,827 - -1.8 1,743,834 + +0.3 1,743,844 + +1.2 1,743,856 + -0.3 1,743,866 - -1.0 1,743,875 + -0.6 1,743,936 + +3.6 1,743,959 - HP15_1646 0.11 +1.6 1,744,131 + HP15_1646 0.34 +1.3 1,744,139 - HP15_1646 0.35 +0.3 1,744,192 + HP15_1646 0.42 +0.8 1,744,222 + HP15_1646 0.46 +1.5 1,744,325 - HP15_1646 0.60 -0.0 1,744,364 + HP15_1646 0.65 +0.0 1,744,380 + HP15_1646 0.67 -0.0 1,744,388 - HP15_1646 0.68 +1.6 1,744,413 + HP15_1646 0.71 +1.7 1,744,829 - HP15_1647 0.41 -0.8 1,745,040 + HP15_1647 0.88 +0.8 1,745,040 + HP15_1647 0.88 -0.4 1,745,090 + +2.3 1,745,090 + +2.1 1,745,104 + +0.1 1,745,292 + HP15_1648 0.37 -0.0 1,745,292 + HP15_1648 0.37 +0.4 1,745,292 + HP15_1648 0.37 -1.0 1,745,292 + HP15_1648 0.37 +0.6 1,745,292 + HP15_1648 0.37 +1.2 1,745,297 + HP15_1648 0.38 +1.9 1,745,300 - HP15_1648 0.39 +0.2 1,745,300 - HP15_1648 0.39 -0.4 1,745,362 + HP15_1648 0.54 +1.0 1,745,367 + HP15_1648 0.56 -0.3 1,745,419 - HP15_1648 0.69 -0.9 1,745,489 + HP15_1648 0.86 +2.2 1,745,626 - -0.4 1,745,626 - +1.8
Or see this region's nucleotide sequence