Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1634 and HP15_1635 are separated by 313 nucleotides HP15_1635 and HP15_1636 are separated by 79 nucleotides
HP15_1634: HP15_1634 - branched-chain alpha-keto acid dehydrogenase complex E1 alpha subunit, at 1,733,306 to 1,734,454
_1634
HP15_1635: HP15_1635 - malate:quinone oxidoreductase, at 1,734,768 to 1,736,204
_1635
HP15_1636: HP15_1636 - NADP-dependent isocitrate dehydrogenase-like protein, at 1,736,284 to 1,738,002
_1636
Position (kb)
1734
1735
1736
1737 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1733.785 kb on - strand, within HP15_1634 at 1733.797 kb on + strand, within HP15_1634 at 1733.797 kb on + strand, within HP15_1634 at 1733.900 kb on + strand, within HP15_1634 at 1733.900 kb on + strand, within HP15_1634 at 1733.900 kb on + strand, within HP15_1634 at 1733.908 kb on - strand, within HP15_1634 at 1733.908 kb on - strand, within HP15_1634 at 1733.908 kb on - strand, within HP15_1634 at 1733.908 kb on - strand, within HP15_1634 at 1734.187 kb on - strand, within HP15_1634 at 1734.254 kb on - strand, within HP15_1634 at 1734.275 kb on + strand, within HP15_1634 at 1734.359 kb on + strand at 1734.389 kb on - strand at 1734.770 kb on - strand at 1734.816 kb on - strand at 1734.882 kb on - strand at 1734.941 kb on + strand, within HP15_1635 at 1735.022 kb on + strand, within HP15_1635 at 1735.022 kb on + strand, within HP15_1635 at 1735.030 kb on - strand, within HP15_1635 at 1735.030 kb on - strand, within HP15_1635 at 1735.222 kb on + strand, within HP15_1635 at 1735.410 kb on + strand, within HP15_1635 at 1735.581 kb on + strand, within HP15_1635 at 1735.581 kb on + strand, within HP15_1635 at 1735.581 kb on + strand, within HP15_1635 at 1735.581 kb on + strand, within HP15_1635 at 1735.589 kb on - strand, within HP15_1635 at 1735.624 kb on - strand, within HP15_1635 at 1735.626 kb on + strand, within HP15_1635 at 1735.710 kb on - strand, within HP15_1635 at 1735.733 kb on - strand, within HP15_1635 at 1735.778 kb on - strand, within HP15_1635 at 1735.841 kb on - strand, within HP15_1635 at 1735.871 kb on - strand, within HP15_1635 at 1735.873 kb on + strand, within HP15_1635 at 1735.881 kb on - strand, within HP15_1635 at 1735.884 kb on + strand, within HP15_1635 at 1735.932 kb on + strand, within HP15_1635 at 1736.305 kb on - strand at 1736.514 kb on + strand, within HP15_1636 at 1736.539 kb on - strand, within HP15_1636 at 1736.591 kb on - strand, within HP15_1636 at 1736.626 kb on - strand, within HP15_1636 at 1736.657 kb on - strand, within HP15_1636 at 1736.726 kb on + strand, within HP15_1636 at 1736.734 kb on - strand, within HP15_1636 at 1736.871 kb on - strand, within HP15_1636 at 1736.937 kb on - strand, within HP15_1636 at 1737.046 kb on - strand, within HP15_1636 at 1737.089 kb on + strand, within HP15_1636 at 1737.096 kb on + strand, within HP15_1636 at 1737.104 kb on - strand, within HP15_1636 at 1737.107 kb on - strand, within HP15_1636 at 1737.119 kb on - strand, within HP15_1636 at 1737.160 kb on - strand, within HP15_1636
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 1,733,785 - HP15_1634 0.42 +1.9 1,733,797 + HP15_1634 0.43 +1.1 1,733,797 + HP15_1634 0.43 +1.1 1,733,900 + HP15_1634 0.52 -0.0 1,733,900 + HP15_1634 0.52 -0.5 1,733,900 + HP15_1634 0.52 +1.0 1,733,908 - HP15_1634 0.52 -0.2 1,733,908 - HP15_1634 0.52 -0.1 1,733,908 - HP15_1634 0.52 -0.4 1,733,908 - HP15_1634 0.52 +1.1 1,734,187 - HP15_1634 0.77 -1.4 1,734,254 - HP15_1634 0.83 +2.0 1,734,275 + HP15_1634 0.84 -0.8 1,734,359 + -0.5 1,734,389 - -0.1 1,734,770 - -0.4 1,734,816 - +1.1 1,734,882 - -1.1 1,734,941 + HP15_1635 0.12 -1.2 1,735,022 + HP15_1635 0.18 +2.7 1,735,022 + HP15_1635 0.18 -0.3 1,735,030 - HP15_1635 0.18 +0.2 1,735,030 - HP15_1635 0.18 -1.4 1,735,222 + HP15_1635 0.32 -1.4 1,735,410 + HP15_1635 0.45 -0.5 1,735,581 + HP15_1635 0.57 -0.1 1,735,581 + HP15_1635 0.57 -2.4 1,735,581 + HP15_1635 0.57 +1.3 1,735,581 + HP15_1635 0.57 +0.2 1,735,589 - HP15_1635 0.57 +2.5 1,735,624 - HP15_1635 0.60 -0.9 1,735,626 + HP15_1635 0.60 -0.2 1,735,710 - HP15_1635 0.66 -0.2 1,735,733 - HP15_1635 0.67 -1.0 1,735,778 - HP15_1635 0.70 +0.0 1,735,841 - HP15_1635 0.75 -0.0 1,735,871 - HP15_1635 0.77 +0.3 1,735,873 + HP15_1635 0.77 +0.1 1,735,881 - HP15_1635 0.77 +1.6 1,735,884 + HP15_1635 0.78 +1.0 1,735,932 + HP15_1635 0.81 -3.6 1,736,305 - -1.0 1,736,514 + HP15_1636 0.13 +0.3 1,736,539 - HP15_1636 0.15 +1.8 1,736,591 - HP15_1636 0.18 -0.7 1,736,626 - HP15_1636 0.20 +0.1 1,736,657 - HP15_1636 0.22 +1.2 1,736,726 + HP15_1636 0.26 +0.8 1,736,734 - HP15_1636 0.26 +1.4 1,736,871 - HP15_1636 0.34 -2.1 1,736,937 - HP15_1636 0.38 -0.3 1,737,046 - HP15_1636 0.44 -1.0 1,737,089 + HP15_1636 0.47 +0.4 1,737,096 + HP15_1636 0.47 -0.2 1,737,104 - HP15_1636 0.48 -0.4 1,737,107 - HP15_1636 0.48 -0.2 1,737,119 - HP15_1636 0.49 +0.4 1,737,160 - HP15_1636 0.51 +1.4
Or see this region's nucleotide sequence