Strain Fitness in Marinobacter adhaerens HP15 around HP15_1597

Experiment: L-Phenylalanine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1596 and HP15_1597 overlap by 20 nucleotidesHP15_1597 and HP15_1598 overlap by 11 nucleotides HP15_1596: HP15_1596 - D-amino acid dehydrogenase 2 small subunit, at 1,691,285 to 1,692,505 _1596 HP15_1597: HP15_1597 - carbohydrate kinase, FGGY, at 1,692,486 to 1,694,045 _1597 HP15_1598: HP15_1598 - FAD dependent oxidoreductase, at 1,694,035 to 1,695,633 _1598 Position (kb) 1692 1693 1694 1695Strain fitness (log2 ratio) -1 0 1 2at 1691.528 kb on - strand, within HP15_1596at 1691.585 kb on + strand, within HP15_1596at 1691.593 kb on - strand, within HP15_1596at 1691.792 kb on - strand, within HP15_1596at 1691.972 kb on + strand, within HP15_1596at 1692.034 kb on - strand, within HP15_1596at 1692.293 kb on - strand, within HP15_1596at 1692.335 kb on + strand, within HP15_1596at 1692.343 kb on - strand, within HP15_1596at 1692.385 kb on + strandat 1692.462 kb on + strandat 1692.467 kb on + strandat 1692.469 kb on + strandat 1692.529 kb on + strandat 1692.541 kb on + strandat 1692.665 kb on + strand, within HP15_1597at 1692.673 kb on - strand, within HP15_1597at 1692.875 kb on - strand, within HP15_1597at 1692.906 kb on + strand, within HP15_1597at 1692.914 kb on - strand, within HP15_1597at 1692.914 kb on - strand, within HP15_1597at 1693.018 kb on + strand, within HP15_1597at 1693.018 kb on + strand, within HP15_1597at 1693.026 kb on - strand, within HP15_1597at 1693.026 kb on - strand, within HP15_1597at 1693.026 kb on - strand, within HP15_1597at 1693.026 kb on - strand, within HP15_1597at 1693.135 kb on + strand, within HP15_1597at 1693.143 kb on - strand, within HP15_1597at 1693.204 kb on + strand, within HP15_1597at 1693.344 kb on + strand, within HP15_1597at 1693.382 kb on + strand, within HP15_1597at 1693.609 kb on - strand, within HP15_1597at 1693.687 kb on - strand, within HP15_1597at 1693.805 kb on + strand, within HP15_1597at 1693.827 kb on - strand, within HP15_1597at 1693.867 kb on + strand, within HP15_1597at 1693.880 kb on + strand, within HP15_1597at 1693.911 kb on + strandat 1694.053 kb on + strandat 1694.201 kb on + strand, within HP15_1598at 1694.205 kb on - strand, within HP15_1598at 1694.223 kb on + strand, within HP15_1598at 1694.282 kb on - strand, within HP15_1598at 1694.284 kb on + strand, within HP15_1598at 1694.287 kb on - strand, within HP15_1598at 1694.316 kb on + strand, within HP15_1598at 1694.413 kb on + strand, within HP15_1598at 1694.414 kb on - strand, within HP15_1598at 1694.414 kb on - strand, within HP15_1598at 1694.519 kb on + strand, within HP15_1598at 1694.519 kb on + strand, within HP15_1598at 1694.548 kb on - strand, within HP15_1598at 1694.619 kb on + strand, within HP15_1598at 1694.625 kb on + strand, within HP15_1598at 1694.625 kb on + strand, within HP15_1598at 1694.625 kb on + strand, within HP15_1598at 1694.633 kb on - strand, within HP15_1598at 1694.806 kb on + strand, within HP15_1598at 1694.814 kb on - strand, within HP15_1598at 1694.865 kb on + strand, within HP15_1598at 1694.870 kb on + strand, within HP15_1598at 1694.873 kb on - strand, within HP15_1598at 1694.873 kb on - strand, within HP15_1598at 1694.901 kb on + strand, within HP15_1598at 1694.903 kb on + strand, within HP15_1598at 1694.904 kb on - strand, within HP15_1598at 1694.911 kb on - strand, within HP15_1598at 1695.028 kb on - strand, within HP15_1598

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
remove
1,691,528 - HP15_1596 0.20 +1.2
1,691,585 + HP15_1596 0.25 +1.1
1,691,593 - HP15_1596 0.25 +0.3
1,691,792 - HP15_1596 0.42 +0.5
1,691,972 + HP15_1596 0.56 +0.9
1,692,034 - HP15_1596 0.61 +0.3
1,692,293 - HP15_1596 0.83 +0.6
1,692,335 + HP15_1596 0.86 -0.0
1,692,343 - HP15_1596 0.87 -0.4
1,692,385 + +1.3
1,692,462 + -0.6
1,692,467 + +1.8
1,692,469 + +0.6
1,692,529 + +0.5
1,692,541 + -0.6
1,692,665 + HP15_1597 0.11 -0.3
1,692,673 - HP15_1597 0.12 +1.4
1,692,875 - HP15_1597 0.25 -0.1
1,692,906 + HP15_1597 0.27 +1.2
1,692,914 - HP15_1597 0.27 +0.9
1,692,914 - HP15_1597 0.27 +1.0
1,693,018 + HP15_1597 0.34 +1.1
1,693,018 + HP15_1597 0.34 +0.4
1,693,026 - HP15_1597 0.35 +0.1
1,693,026 - HP15_1597 0.35 +0.8
1,693,026 - HP15_1597 0.35 +2.7
1,693,026 - HP15_1597 0.35 -0.3
1,693,135 + HP15_1597 0.42 +1.2
1,693,143 - HP15_1597 0.42 -0.2
1,693,204 + HP15_1597 0.46 +1.1
1,693,344 + HP15_1597 0.55 +0.1
1,693,382 + HP15_1597 0.57 -1.4
1,693,609 - HP15_1597 0.72 -0.4
1,693,687 - HP15_1597 0.77 +0.8
1,693,805 + HP15_1597 0.85 +2.0
1,693,827 - HP15_1597 0.86 +0.3
1,693,867 + HP15_1597 0.89 -0.4
1,693,880 + HP15_1597 0.89 +0.9
1,693,911 + +0.6
1,694,053 + +1.4
1,694,201 + HP15_1598 0.10 -1.4
1,694,205 - HP15_1598 0.11 -0.2
1,694,223 + HP15_1598 0.12 +0.8
1,694,282 - HP15_1598 0.15 +1.0
1,694,284 + HP15_1598 0.16 +1.2
1,694,287 - HP15_1598 0.16 -0.8
1,694,316 + HP15_1598 0.18 +0.2
1,694,413 + HP15_1598 0.24 -0.1
1,694,414 - HP15_1598 0.24 +1.4
1,694,414 - HP15_1598 0.24 +0.6
1,694,519 + HP15_1598 0.30 -0.0
1,694,519 + HP15_1598 0.30 +0.9
1,694,548 - HP15_1598 0.32 -0.0
1,694,619 + HP15_1598 0.37 -0.3
1,694,625 + HP15_1598 0.37 +0.1
1,694,625 + HP15_1598 0.37 +0.4
1,694,625 + HP15_1598 0.37 +1.2
1,694,633 - HP15_1598 0.37 +0.6
1,694,806 + HP15_1598 0.48 -0.7
1,694,814 - HP15_1598 0.49 +1.3
1,694,865 + HP15_1598 0.52 +2.1
1,694,870 + HP15_1598 0.52 -0.2
1,694,873 - HP15_1598 0.52 -0.9
1,694,873 - HP15_1598 0.52 -0.6
1,694,901 + HP15_1598 0.54 +0.3
1,694,903 + HP15_1598 0.54 -0.4
1,694,904 - HP15_1598 0.54 +0.5
1,694,911 - HP15_1598 0.55 -0.8
1,695,028 - HP15_1598 0.62 -1.4

Or see this region's nucleotide sequence