Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1547 and HP15_1548 are separated by 37 nucleotides HP15_1548 and HP15_1549 are separated by 3 nucleotides HP15_1549 and HP15_1550 overlap by 1 nucleotides HP15_1550 and HP15_1551 are separated by 20 nucleotides
HP15_1547: HP15_1547 - response regulator receiver modulated CheW protein, at 1,630,241 to 1,631,170
_1547
HP15_1548: HP15_1548 - chemotaxis protein methyltransferase CheR, at 1,631,208 to 1,632,035
_1548
HP15_1549: HP15_1549 - major facilitator superfamily MFS_1, at 1,632,039 to 1,633,235
_1549
HP15_1550: HP15_1550 - protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family protein, at 1,633,235 to 1,633,852
_1550
HP15_1551: HP15_1551 - transcriptional Regulator, LysR family protein, at 1,633,873 to 1,634,772
_1551
Position (kb)
1632
1633
1634 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1631.079 kb on + strand at 1631.164 kb on + strand at 1631.295 kb on - strand, within HP15_1548 at 1631.536 kb on - strand, within HP15_1548 at 1631.931 kb on - strand, within HP15_1548 at 1632.200 kb on - strand, within HP15_1549 at 1632.217 kb on + strand, within HP15_1549 at 1632.225 kb on - strand, within HP15_1549 at 1632.303 kb on - strand, within HP15_1549 at 1632.310 kb on - strand, within HP15_1549 at 1632.310 kb on - strand, within HP15_1549 at 1632.665 kb on + strand, within HP15_1549 at 1632.683 kb on - strand, within HP15_1549 at 1632.690 kb on + strand, within HP15_1549 at 1632.765 kb on - strand, within HP15_1549 at 1632.824 kb on + strand, within HP15_1549 at 1633.143 kb on + strand at 1633.254 kb on - strand at 1633.280 kb on + strand at 1633.289 kb on - strand at 1633.544 kb on - strand, within HP15_1550 at 1633.621 kb on - strand, within HP15_1550 at 1633.765 kb on - strand, within HP15_1550 at 1633.863 kb on + strand at 1633.881 kb on + strand at 1633.888 kb on - strand at 1634.010 kb on - strand, within HP15_1551 at 1634.064 kb on - strand, within HP15_1551 at 1634.123 kb on - strand, within HP15_1551 at 1634.216 kb on - strand, within HP15_1551
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 1,631,079 + -0.4 1,631,164 + -0.1 1,631,295 - HP15_1548 0.11 -0.7 1,631,536 - HP15_1548 0.40 -0.7 1,631,931 - HP15_1548 0.87 +0.1 1,632,200 - HP15_1549 0.13 -0.6 1,632,217 + HP15_1549 0.15 -0.8 1,632,225 - HP15_1549 0.16 -0.7 1,632,303 - HP15_1549 0.22 +0.2 1,632,310 - HP15_1549 0.23 -0.2 1,632,310 - HP15_1549 0.23 -0.7 1,632,665 + HP15_1549 0.52 +0.9 1,632,683 - HP15_1549 0.54 -1.0 1,632,690 + HP15_1549 0.54 +0.0 1,632,765 - HP15_1549 0.61 -2.1 1,632,824 + HP15_1549 0.66 +1.6 1,633,143 + +1.8 1,633,254 - -0.3 1,633,280 + +0.0 1,633,289 - +1.5 1,633,544 - HP15_1550 0.50 -0.0 1,633,621 - HP15_1550 0.62 -0.7 1,633,765 - HP15_1550 0.86 -1.2 1,633,863 + -1.4 1,633,881 + +1.0 1,633,888 - +0.1 1,634,010 - HP15_1551 0.15 -1.4 1,634,064 - HP15_1551 0.21 +1.5 1,634,123 - HP15_1551 0.28 +1.9 1,634,216 - HP15_1551 0.38 -0.9
Or see this region's nucleotide sequence