Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1456 and HP15_1457 are separated by 232 nucleotides HP15_1457 and HP15_1458 are separated by 73 nucleotides HP15_1458 and HP15_1459 are separated by 176 nucleotides
HP15_1456: HP15_1456 - extracellular solute-binding protein, family 1, at 1,532,308 to 1,533,318
_1456
HP15_1457: HP15_1457 - HAD-superfamily subfamily IB, PSPase-like protein, at 1,533,551 to 1,533,790
_1457
HP15_1458: HP15_1458 - conserved hypothetical protein, at 1,533,864 to 1,534,457
_1458
HP15_1459: HP15_1459 - metal dependent phosphohydrolase, at 1,534,634 to 1,535,941
_1459
Position (kb)
1533
1534
1535 Strain fitness (log2 ratio)
-1
0
1
2 at 1532.895 kb on + strand, within HP15_1456 at 1532.988 kb on - strand, within HP15_1456 at 1533.217 kb on - strand, within HP15_1456 at 1533.217 kb on - strand, within HP15_1456 at 1533.476 kb on + strand at 1533.533 kb on - strand at 1533.629 kb on + strand, within HP15_1457 at 1533.806 kb on + strand at 1533.825 kb on - strand at 1533.910 kb on + strand at 1533.918 kb on - strand at 1534.013 kb on - strand, within HP15_1458 at 1534.081 kb on - strand, within HP15_1458 at 1534.289 kb on + strand, within HP15_1458 at 1534.316 kb on + strand, within HP15_1458 at 1534.324 kb on - strand, within HP15_1458 at 1534.368 kb on - strand, within HP15_1458 at 1534.410 kb on - strand at 1534.410 kb on - strand at 1534.410 kb on - strand at 1534.694 kb on + strand at 1534.702 kb on - strand at 1534.702 kb on - strand at 1534.712 kb on - strand at 1534.876 kb on + strand, within HP15_1459 at 1534.876 kb on + strand, within HP15_1459 at 1535.069 kb on + strand, within HP15_1459 at 1535.142 kb on - strand, within HP15_1459 at 1535.178 kb on + strand, within HP15_1459 at 1535.246 kb on - strand, within HP15_1459 at 1535.256 kb on - strand, within HP15_1459 at 1535.319 kb on + strand, within HP15_1459 at 1535.327 kb on - strand, within HP15_1459 at 1535.327 kb on - strand, within HP15_1459 at 1535.389 kb on + strand, within HP15_1459 at 1535.389 kb on + strand, within HP15_1459 at 1535.389 kb on + strand, within HP15_1459 at 1535.397 kb on - strand, within HP15_1459 at 1535.397 kb on - strand, within HP15_1459
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 1,532,895 + HP15_1456 0.58 +1.8 1,532,988 - HP15_1456 0.67 -0.4 1,533,217 - HP15_1456 0.90 -0.4 1,533,217 - HP15_1456 0.90 +0.2 1,533,476 + -0.2 1,533,533 - +0.9 1,533,629 + HP15_1457 0.33 +0.9 1,533,806 + +1.1 1,533,825 - +0.4 1,533,910 + +1.4 1,533,918 - -0.7 1,534,013 - HP15_1458 0.25 +1.9 1,534,081 - HP15_1458 0.37 +1.1 1,534,289 + HP15_1458 0.72 +0.4 1,534,316 + HP15_1458 0.76 +0.3 1,534,324 - HP15_1458 0.77 +1.1 1,534,368 - HP15_1458 0.85 -0.1 1,534,410 - +1.2 1,534,410 - +2.2 1,534,410 - -1.2 1,534,694 + -0.3 1,534,702 - +1.2 1,534,702 - -0.4 1,534,712 - -0.4 1,534,876 + HP15_1459 0.19 +1.4 1,534,876 + HP15_1459 0.19 -0.7 1,535,069 + HP15_1459 0.33 +1.2 1,535,142 - HP15_1459 0.39 -0.2 1,535,178 + HP15_1459 0.42 +2.4 1,535,246 - HP15_1459 0.47 -0.7 1,535,256 - HP15_1459 0.48 +0.3 1,535,319 + HP15_1459 0.52 +0.6 1,535,327 - HP15_1459 0.53 -0.3 1,535,327 - HP15_1459 0.53 -0.9 1,535,389 + HP15_1459 0.58 -0.5 1,535,389 + HP15_1459 0.58 -0.8 1,535,389 + HP15_1459 0.58 -0.3 1,535,397 - HP15_1459 0.58 +2.4 1,535,397 - HP15_1459 0.58 +1.2
Or see this region's nucleotide sequence