Strain Fitness in Marinobacter adhaerens HP15 around HP15_1431

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1430 and HP15_1431 are separated by 624 nucleotidesHP15_1431 and HP15_1432 are separated by 65 nucleotidesHP15_1432 and HP15_1433 are separated by 71 nucleotidesHP15_1433 and HP15_1434 are separated by 1 nucleotides HP15_1430: HP15_1430 - glutathione S-transferase family protein, at 1,510,454 to 1,511,050 _1430 HP15_1431: HP15_1431 - zinc finger, C4 DksA/TraR-type, at 1,511,675 to 1,511,974 _1431 HP15_1432: HP15_1432 - conserved hypothetical protein, membrane, at 1,512,040 to 1,512,318 _1432 HP15_1433: HP15_1433 - conserved hypothetical protein, secreted, at 1,512,390 to 1,512,887 _1433 HP15_1434: HP15_1434 - conserved hypothetical protein, at 1,512,889 to 1,513,209 _1434 Position (kb) 1511 1512Strain fitness (log2 ratio) -1 0 1 2at 1510.787 kb on + strand, within HP15_1430at 1510.787 kb on + strand, within HP15_1430at 1510.816 kb on + strand, within HP15_1430at 1510.816 kb on + strand, within HP15_1430at 1510.816 kb on + strand, within HP15_1430at 1510.816 kb on + strand, within HP15_1430at 1510.824 kb on - strand, within HP15_1430at 1510.856 kb on - strand, within HP15_1430at 1510.872 kb on + strand, within HP15_1430at 1511.029 kb on + strandat 1511.054 kb on + strandat 1511.145 kb on + strandat 1511.153 kb on - strandat 1511.257 kb on - strandat 1511.480 kb on - strandat 1511.669 kb on - strandat 1511.937 kb on + strand, within HP15_1431at 1511.947 kb on + strandat 1511.971 kb on - strandat 1512.020 kb on + strandat 1512.046 kb on - strandat 1512.106 kb on + strand, within HP15_1432at 1512.114 kb on - strand, within HP15_1432at 1512.114 kb on - strand, within HP15_1432at 1512.348 kb on - strandat 1512.513 kb on - strand, within HP15_1433at 1512.577 kb on + strand, within HP15_1433at 1512.577 kb on + strand, within HP15_1433at 1512.585 kb on - strand, within HP15_1433at 1512.585 kb on - strand, within HP15_1433at 1512.585 kb on - strand, within HP15_1433at 1512.662 kb on - strand, within HP15_1433at 1512.852 kb on + strandat 1512.968 kb on - strand, within HP15_1434

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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1,510,787 + HP15_1430 0.56 -0.6
1,510,787 + HP15_1430 0.56 +2.0
1,510,816 + HP15_1430 0.61 +1.5
1,510,816 + HP15_1430 0.61 -0.4
1,510,816 + HP15_1430 0.61 +1.2
1,510,816 + HP15_1430 0.61 +1.6
1,510,824 - HP15_1430 0.62 +1.2
1,510,856 - HP15_1430 0.67 -0.5
1,510,872 + HP15_1430 0.70 -1.0
1,511,029 + +0.1
1,511,054 + +0.3
1,511,145 + -1.4
1,511,153 - +1.4
1,511,257 - -0.7
1,511,480 - -1.0
1,511,669 - -1.1
1,511,937 + HP15_1431 0.87 -0.6
1,511,947 + -0.3
1,511,971 - +0.1
1,512,020 + +1.3
1,512,046 - +0.1
1,512,106 + HP15_1432 0.24 -0.3
1,512,114 - HP15_1432 0.27 +1.3
1,512,114 - HP15_1432 0.27 -0.9
1,512,348 - -1.0
1,512,513 - HP15_1433 0.25 +2.4
1,512,577 + HP15_1433 0.38 +0.2
1,512,577 + HP15_1433 0.38 -0.3
1,512,585 - HP15_1433 0.39 +1.6
1,512,585 - HP15_1433 0.39 +2.2
1,512,585 - HP15_1433 0.39 -1.0
1,512,662 - HP15_1433 0.55 +0.4
1,512,852 + +0.3
1,512,968 - HP15_1434 0.25 +0.9

Or see this region's nucleotide sequence