Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1426 and HP15_1427 are separated by 132 nucleotides HP15_1427 and HP15_1428 overlap by 8 nucleotides HP15_1428 and HP15_1429 are separated by 255 nucleotides HP15_1429 and HP15_1430 are separated by 65 nucleotides
HP15_1426: HP15_1426 - 6-aminohexanoate-dimer hydrolase, at 1,507,943 to 1,508,941
_1426
HP15_1427: HP15_1427 - protein belonging to uncharacterized protein family UPF0060, at 1,509,074 to 1,509,406
_1427
HP15_1428: HP15_1428 - hypothetical protein, at 1,509,399 to 1,509,590
_1428
HP15_1429: HP15_1429 - DinB family protein, at 1,509,846 to 1,510,388
_1429
HP15_1430: HP15_1430 - glutathione S-transferase family protein, at 1,510,454 to 1,511,050
_1430
Position (kb)
1509
1510 Strain fitness (log2 ratio)
-1
0
1
2 at 1508.565 kb on - strand, within HP15_1426 at 1508.721 kb on + strand, within HP15_1426 at 1508.721 kb on + strand, within HP15_1426 at 1508.826 kb on + strand, within HP15_1426 at 1508.903 kb on + strand at 1508.941 kb on - strand at 1508.943 kb on + strand at 1508.951 kb on - strand at 1509.032 kb on - strand at 1509.126 kb on - strand, within HP15_1427 at 1509.197 kb on + strand, within HP15_1427 at 1509.205 kb on - strand, within HP15_1427 at 1509.217 kb on - strand, within HP15_1427 at 1509.286 kb on - strand, within HP15_1427 at 1509.483 kb on + strand, within HP15_1428 at 1509.484 kb on - strand, within HP15_1428 at 1509.510 kb on - strand, within HP15_1428 at 1509.603 kb on + strand at 1509.618 kb on + strand at 1509.626 kb on - strand at 1509.649 kb on + strand at 1509.757 kb on - strand at 1509.763 kb on + strand at 1509.856 kb on + strand at 1509.868 kb on - strand at 1509.910 kb on + strand, within HP15_1429 at 1509.920 kb on + strand, within HP15_1429 at 1510.003 kb on + strand, within HP15_1429 at 1510.011 kb on - strand, within HP15_1429 at 1510.135 kb on - strand, within HP15_1429 at 1510.152 kb on + strand, within HP15_1429 at 1510.301 kb on + strand, within HP15_1429 at 1510.459 kb on - strand at 1510.459 kb on - strand at 1510.515 kb on + strand, within HP15_1430 at 1510.523 kb on - strand, within HP15_1430 at 1510.584 kb on + strand, within HP15_1430 at 1510.584 kb on + strand, within HP15_1430
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 1,508,565 - HP15_1426 0.62 -0.6 1,508,721 + HP15_1426 0.78 -0.2 1,508,721 + HP15_1426 0.78 -0.2 1,508,826 + HP15_1426 0.88 +1.7 1,508,903 + +1.3 1,508,941 - +1.5 1,508,943 + +0.6 1,508,951 - +2.2 1,509,032 - -0.2 1,509,126 - HP15_1427 0.16 -0.4 1,509,197 + HP15_1427 0.37 -0.2 1,509,205 - HP15_1427 0.39 +0.8 1,509,217 - HP15_1427 0.43 +1.3 1,509,286 - HP15_1427 0.64 +0.4 1,509,483 + HP15_1428 0.44 -0.2 1,509,484 - HP15_1428 0.44 -0.8 1,509,510 - HP15_1428 0.58 -1.0 1,509,603 + -0.1 1,509,618 + +0.7 1,509,626 - -1.6 1,509,649 + -0.6 1,509,757 - -0.6 1,509,763 + +1.5 1,509,856 + -0.2 1,509,868 - +0.2 1,509,910 + HP15_1429 0.12 +0.1 1,509,920 + HP15_1429 0.14 +0.8 1,510,003 + HP15_1429 0.29 +1.2 1,510,011 - HP15_1429 0.30 -0.1 1,510,135 - HP15_1429 0.53 -0.1 1,510,152 + HP15_1429 0.56 +1.8 1,510,301 + HP15_1429 0.84 -0.0 1,510,459 - -0.6 1,510,459 - -0.5 1,510,515 + HP15_1430 0.10 +1.7 1,510,523 - HP15_1430 0.12 +1.4 1,510,584 + HP15_1430 0.22 -0.4 1,510,584 + HP15_1430 0.22 -0.5
Or see this region's nucleotide sequence