Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1282 and HP15_1283 are separated by 206 nucleotides HP15_1283 and HP15_1284 are separated by 205 nucleotides HP15_1284 and HP15_1285 are separated by 60 nucleotides
HP15_1282: HP15_1282 - peptidase M23B, at 1,342,521 to 1,343,411
_1282
HP15_1283: HP15_1283 - RNA polymerase, sigma 70 subunit, RpoD family, at 1,343,618 to 1,344,613
_1283
HP15_1284: HP15_1284 - conserved hypothetical protein, secreted, at 1,344,819 to 1,345,394
_1284
HP15_1285: HP15_1285 - endonuclease III, at 1,345,455 to 1,346,093
_1285
Position (kb)
1343
1344
1345 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1342.618 kb on - strand, within HP15_1282 at 1342.766 kb on - strand, within HP15_1282 at 1342.778 kb on - strand, within HP15_1282 at 1342.883 kb on + strand, within HP15_1282 at 1343.024 kb on + strand, within HP15_1282 at 1343.032 kb on - strand, within HP15_1282 at 1343.056 kb on + strand, within HP15_1282 at 1343.179 kb on - strand, within HP15_1282 at 1343.242 kb on + strand, within HP15_1282 at 1343.311 kb on - strand, within HP15_1282 at 1343.431 kb on - strand at 1343.448 kb on + strand at 1343.448 kb on + strand at 1343.448 kb on + strand at 1343.743 kb on - strand, within HP15_1283 at 1343.775 kb on + strand, within HP15_1283 at 1343.775 kb on + strand, within HP15_1283 at 1343.793 kb on + strand, within HP15_1283 at 1343.877 kb on + strand, within HP15_1283 at 1343.924 kb on - strand, within HP15_1283 at 1343.969 kb on + strand, within HP15_1283 at 1343.994 kb on + strand, within HP15_1283 at 1343.994 kb on + strand, within HP15_1283 at 1343.997 kb on - strand, within HP15_1283 at 1344.004 kb on + strand, within HP15_1283 at 1344.012 kb on - strand, within HP15_1283 at 1344.012 kb on - strand, within HP15_1283 at 1344.341 kb on + strand, within HP15_1283 at 1344.390 kb on - strand, within HP15_1283 at 1344.396 kb on + strand, within HP15_1283 at 1344.495 kb on - strand, within HP15_1283 at 1344.538 kb on - strand at 1344.750 kb on + strand at 1344.750 kb on + strand at 1344.758 kb on - strand at 1344.864 kb on + strand at 1344.978 kb on - strand, within HP15_1284 at 1345.195 kb on - strand, within HP15_1284 at 1345.383 kb on + strand at 1345.512 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 1,342,618 - HP15_1282 0.11 +0.7 1,342,766 - HP15_1282 0.27 +0.4 1,342,778 - HP15_1282 0.29 +0.7 1,342,883 + HP15_1282 0.41 +0.7 1,343,024 + HP15_1282 0.56 +0.7 1,343,032 - HP15_1282 0.57 +0.9 1,343,056 + HP15_1282 0.60 +0.7 1,343,179 - HP15_1282 0.74 -1.7 1,343,242 + HP15_1282 0.81 +0.3 1,343,311 - HP15_1282 0.89 -0.2 1,343,431 - +0.2 1,343,448 + -0.5 1,343,448 + +0.6 1,343,448 + -0.2 1,343,743 - HP15_1283 0.13 +0.0 1,343,775 + HP15_1283 0.16 +0.6 1,343,775 + HP15_1283 0.16 +0.9 1,343,793 + HP15_1283 0.18 -2.4 1,343,877 + HP15_1283 0.26 -0.0 1,343,924 - HP15_1283 0.31 -4.2 1,343,969 + HP15_1283 0.35 -4.1 1,343,994 + HP15_1283 0.38 -3.2 1,343,994 + HP15_1283 0.38 -2.9 1,343,997 - HP15_1283 0.38 -4.1 1,344,004 + HP15_1283 0.39 -1.9 1,344,012 - HP15_1283 0.40 +0.3 1,344,012 - HP15_1283 0.40 -3.2 1,344,341 + HP15_1283 0.73 -2.4 1,344,390 - HP15_1283 0.78 -3.2 1,344,396 + HP15_1283 0.78 -2.9 1,344,495 - HP15_1283 0.88 -0.4 1,344,538 - -1.7 1,344,750 + +1.8 1,344,750 + +0.3 1,344,758 - -1.4 1,344,864 + +1.3 1,344,978 - HP15_1284 0.28 -1.1 1,345,195 - HP15_1284 0.65 +1.1 1,345,383 + -1.2 1,345,512 + -0.4
Or see this region's nucleotide sequence