Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10820

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10810 and PGA1_c10820 are separated by 240 nucleotidesPGA1_c10820 and PGA1_c10830 are separated by 567 nucleotides PGA1_c10810: PGA1_c10810 - amidophosphoribosyltransferase PurF, at 1,115,940 to 1,117,406 _c10810 PGA1_c10820: PGA1_c10820 - hypothetical protein, at 1,117,647 to 1,118,351 _c10820 PGA1_c10830: PGA1_c10830 - colicin V production protein-like protein, at 1,118,919 to 1,119,473 _c10830 Position (kb) 1117 1118 1119Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1116.695 kb on + strand, within PGA1_c10810at 1116.743 kb on + strand, within PGA1_c10810at 1116.770 kb on + strand, within PGA1_c10810at 1116.770 kb on + strand, within PGA1_c10810at 1116.832 kb on + strand, within PGA1_c10810at 1116.840 kb on - strand, within PGA1_c10810at 1116.903 kb on - strand, within PGA1_c10810at 1116.918 kb on - strand, within PGA1_c10810at 1116.962 kb on + strand, within PGA1_c10810at 1117.018 kb on - strand, within PGA1_c10810at 1117.020 kb on - strand, within PGA1_c10810at 1117.075 kb on + strand, within PGA1_c10810at 1117.153 kb on + strand, within PGA1_c10810at 1117.173 kb on - strand, within PGA1_c10810at 1117.178 kb on - strand, within PGA1_c10810at 1117.222 kb on + strand, within PGA1_c10810at 1117.230 kb on - strand, within PGA1_c10810at 1117.230 kb on - strand, within PGA1_c10810at 1117.394 kb on - strandat 1117.509 kb on - strandat 1117.537 kb on - strandat 1117.548 kb on + strandat 1117.565 kb on + strandat 1117.571 kb on + strandat 1117.583 kb on + strandat 1117.601 kb on + strandat 1117.611 kb on + strandat 1117.644 kb on + strandat 1117.678 kb on - strandat 1117.699 kb on - strandat 1117.780 kb on + strand, within PGA1_c10820at 1117.798 kb on - strand, within PGA1_c10820at 1117.798 kb on - strand, within PGA1_c10820at 1117.835 kb on - strand, within PGA1_c10820at 1117.867 kb on - strand, within PGA1_c10820at 1118.099 kb on - strand, within PGA1_c10820at 1118.107 kb on + strand, within PGA1_c10820at 1118.121 kb on + strand, within PGA1_c10820at 1118.139 kb on + strand, within PGA1_c10820at 1118.236 kb on - strand, within PGA1_c10820at 1118.259 kb on + strand, within PGA1_c10820at 1118.259 kb on + strand, within PGA1_c10820at 1118.275 kb on - strand, within PGA1_c10820at 1118.361 kb on - strandat 1118.418 kb on + strandat 1118.453 kb on + strandat 1118.463 kb on + strandat 1118.479 kb on + strandat 1118.483 kb on + strandat 1118.674 kb on - strandat 1118.729 kb on - strandat 1118.730 kb on + strandat 1118.737 kb on - strandat 1118.778 kb on + strandat 1118.778 kb on + strandat 1118.778 kb on + strandat 1118.778 kb on + strandat 1118.786 kb on - strandat 1118.852 kb on + strandat 1118.860 kb on - strandat 1118.884 kb on + strandat 1118.884 kb on + strandat 1118.887 kb on - strandat 1118.942 kb on + strandat 1119.057 kb on + strand, within PGA1_c10830at 1119.157 kb on - strand, within PGA1_c10830at 1119.179 kb on - strand, within PGA1_c10830at 1119.195 kb on - strand, within PGA1_c10830at 1119.215 kb on - strand, within PGA1_c10830at 1119.273 kb on + strand, within PGA1_c10830at 1119.294 kb on + strand, within PGA1_c10830at 1119.350 kb on - strand, within PGA1_c10830

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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1,116,695 + PGA1_c10810 0.51 -0.8
1,116,743 + PGA1_c10810 0.55 -2.1
1,116,770 + PGA1_c10810 0.57 +1.9
1,116,770 + PGA1_c10810 0.57 -0.5
1,116,832 + PGA1_c10810 0.61 +0.5
1,116,840 - PGA1_c10810 0.61 -0.5
1,116,903 - PGA1_c10810 0.66 +1.3
1,116,918 - PGA1_c10810 0.67 -0.7
1,116,962 + PGA1_c10810 0.70 -0.3
1,117,018 - PGA1_c10810 0.73 -0.4
1,117,020 - PGA1_c10810 0.74 -1.1
1,117,075 + PGA1_c10810 0.77 -0.1
1,117,153 + PGA1_c10810 0.83 +0.0
1,117,173 - PGA1_c10810 0.84 +0.5
1,117,178 - PGA1_c10810 0.84 -0.0
1,117,222 + PGA1_c10810 0.87 -0.9
1,117,230 - PGA1_c10810 0.88 +0.4
1,117,230 - PGA1_c10810 0.88 +0.9
1,117,394 - +0.7
1,117,509 - -1.5
1,117,537 - -0.6
1,117,548 + +0.5
1,117,565 + -0.3
1,117,571 + +1.0
1,117,583 + +0.5
1,117,601 + +0.6
1,117,611 + -1.1
1,117,644 + +1.5
1,117,678 - -1.7
1,117,699 - +1.5
1,117,780 + PGA1_c10820 0.19 -1.3
1,117,798 - PGA1_c10820 0.21 +0.3
1,117,798 - PGA1_c10820 0.21 -0.6
1,117,835 - PGA1_c10820 0.27 +1.2
1,117,867 - PGA1_c10820 0.31 -1.4
1,118,099 - PGA1_c10820 0.64 -2.7
1,118,107 + PGA1_c10820 0.65 +1.7
1,118,121 + PGA1_c10820 0.67 +0.5
1,118,139 + PGA1_c10820 0.70 +1.2
1,118,236 - PGA1_c10820 0.84 -1.3
1,118,259 + PGA1_c10820 0.87 -0.7
1,118,259 + PGA1_c10820 0.87 -0.1
1,118,275 - PGA1_c10820 0.89 -0.1
1,118,361 - -0.3
1,118,418 + +0.4
1,118,453 + -0.1
1,118,463 + +0.3
1,118,479 + -1.4
1,118,483 + -2.2
1,118,674 - +0.6
1,118,729 - -0.1
1,118,730 + -0.0
1,118,737 - +0.5
1,118,778 + +0.6
1,118,778 + -0.0
1,118,778 + -0.7
1,118,778 + +0.2
1,118,786 - +1.8
1,118,852 + -0.5
1,118,860 - -1.3
1,118,884 + +0.2
1,118,884 + -0.9
1,118,887 - -0.6
1,118,942 + -1.5
1,119,057 + PGA1_c10830 0.25 -2.8
1,119,157 - PGA1_c10830 0.43 -0.6
1,119,179 - PGA1_c10830 0.47 -2.2
1,119,195 - PGA1_c10830 0.50 -2.3
1,119,215 - PGA1_c10830 0.53 -3.7
1,119,273 + PGA1_c10830 0.64 -2.5
1,119,294 + PGA1_c10830 0.68 -2.5
1,119,350 - PGA1_c10830 0.78 -2.9

Or see this region's nucleotide sequence