Strain Fitness in Marinobacter adhaerens HP15 around HP15_1015

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1013 and HP15_1014 are separated by 55 nucleotidesHP15_1014 and HP15_1015 are separated by 27 nucleotidesHP15_1015 and HP15_1016 are separated by 395 nucleotidesHP15_1016 and HP15_1017 overlap by 4 nucleotides HP15_1013: HP15_1013 - nitrate transport system permease protein, at 1,026,334 to 1,027,161 _1013 HP15_1014: HP15_1014 - nitrate ABC transporter, ATPase subunits C and D, at 1,027,217 to 1,028,125 _1014 HP15_1015: HP15_1015 - cyanate lyase, at 1,028,153 to 1,028,596 _1015 HP15_1016: HP15_1016 - acetolactate synthase II, small subunit-like protein, at 1,028,992 to 1,029,270 _1016 HP15_1017: HP15_1017 - acetolactate synthase, large subunit, biosynthetic type, at 1,029,267 to 1,030,967 _1017 Position (kb) 1028 1029Strain fitness (log2 ratio) -1 0 1 2at 1027.156 kb on + strandat 1027.190 kb on + strandat 1027.199 kb on + strandat 1027.402 kb on - strand, within HP15_1014at 1027.507 kb on + strand, within HP15_1014at 1027.507 kb on + strand, within HP15_1014at 1027.713 kb on - strand, within HP15_1014at 1028.057 kb on - strandat 1028.134 kb on - strandat 1028.134 kb on - strandat 1028.173 kb on - strandat 1028.198 kb on + strand, within HP15_1015at 1028.214 kb on + strand, within HP15_1015at 1028.215 kb on - strand, within HP15_1015at 1028.303 kb on + strand, within HP15_1015at 1028.328 kb on + strand, within HP15_1015at 1028.375 kb on + strand, within HP15_1015at 1028.547 kb on + strand, within HP15_1015at 1028.547 kb on + strand, within HP15_1015at 1028.572 kb on + strandat 1028.572 kb on + strandat 1028.634 kb on - strandat 1028.761 kb on - strandat 1028.862 kb on - strandat 1028.983 kb on + strandat 1028.986 kb on - strandat 1029.115 kb on + strand, within HP15_1016at 1029.179 kb on + strand, within HP15_1016at 1029.231 kb on + strand, within HP15_1016at 1029.259 kb on - strandat 1029.365 kb on + strandat 1029.435 kb on + strandat 1029.435 kb on + strandat 1029.538 kb on + strand, within HP15_1017

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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1,027,156 + -0.1
1,027,190 + +2.1
1,027,199 + +1.7
1,027,402 - HP15_1014 0.20 +1.3
1,027,507 + HP15_1014 0.32 -0.8
1,027,507 + HP15_1014 0.32 +1.2
1,027,713 - HP15_1014 0.55 -0.3
1,028,057 - -1.2
1,028,134 - -0.4
1,028,134 - +1.1
1,028,173 - -1.2
1,028,198 + HP15_1015 0.10 +1.8
1,028,214 + HP15_1015 0.14 +1.2
1,028,215 - HP15_1015 0.14 -0.9
1,028,303 + HP15_1015 0.34 +1.9
1,028,328 + HP15_1015 0.39 -0.4
1,028,375 + HP15_1015 0.50 +0.4
1,028,547 + HP15_1015 0.89 -0.0
1,028,547 + HP15_1015 0.89 +1.2
1,028,572 + +0.2
1,028,572 + -1.1
1,028,634 - -0.2
1,028,761 - -1.2
1,028,862 - -0.2
1,028,983 + -0.8
1,028,986 - +0.2
1,029,115 + HP15_1016 0.44 +0.7
1,029,179 + HP15_1016 0.67 -1.2
1,029,231 + HP15_1016 0.86 -0.6
1,029,259 - -0.9
1,029,365 + +2.0
1,029,435 + +0.3
1,029,435 + +0.2
1,029,538 + HP15_1017 0.16 -0.2

Or see this region's nucleotide sequence