Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1013 and HP15_1014 are separated by 55 nucleotides HP15_1014 and HP15_1015 are separated by 27 nucleotides HP15_1015 and HP15_1016 are separated by 395 nucleotides HP15_1016 and HP15_1017 overlap by 4 nucleotides
HP15_1013: HP15_1013 - nitrate transport system permease protein, at 1,026,334 to 1,027,161
_1013
HP15_1014: HP15_1014 - nitrate ABC transporter, ATPase subunits C and D, at 1,027,217 to 1,028,125
_1014
HP15_1015: HP15_1015 - cyanate lyase, at 1,028,153 to 1,028,596
_1015
HP15_1016: HP15_1016 - acetolactate synthase II, small subunit-like protein, at 1,028,992 to 1,029,270
_1016
HP15_1017: HP15_1017 - acetolactate synthase, large subunit, biosynthetic type, at 1,029,267 to 1,030,967
_1017
Position (kb)
1028
1029 Strain fitness (log2 ratio)
-1
0
1
2 at 1027.156 kb on + strand at 1027.190 kb on + strand at 1027.199 kb on + strand at 1027.402 kb on - strand, within HP15_1014 at 1027.507 kb on + strand, within HP15_1014 at 1027.507 kb on + strand, within HP15_1014 at 1027.713 kb on - strand, within HP15_1014 at 1028.057 kb on - strand at 1028.134 kb on - strand at 1028.134 kb on - strand at 1028.173 kb on - strand at 1028.198 kb on + strand, within HP15_1015 at 1028.214 kb on + strand, within HP15_1015 at 1028.215 kb on - strand, within HP15_1015 at 1028.303 kb on + strand, within HP15_1015 at 1028.328 kb on + strand, within HP15_1015 at 1028.375 kb on + strand, within HP15_1015 at 1028.547 kb on + strand, within HP15_1015 at 1028.547 kb on + strand, within HP15_1015 at 1028.572 kb on + strand at 1028.572 kb on + strand at 1028.634 kb on - strand at 1028.761 kb on - strand at 1028.862 kb on - strand at 1028.983 kb on + strand at 1028.986 kb on - strand at 1029.115 kb on + strand, within HP15_1016 at 1029.179 kb on + strand, within HP15_1016 at 1029.231 kb on + strand, within HP15_1016 at 1029.259 kb on - strand at 1029.365 kb on + strand at 1029.435 kb on + strand at 1029.435 kb on + strand at 1029.538 kb on + strand, within HP15_1017
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 1,027,156 + -0.1 1,027,190 + +2.1 1,027,199 + +1.7 1,027,402 - HP15_1014 0.20 +1.3 1,027,507 + HP15_1014 0.32 -0.8 1,027,507 + HP15_1014 0.32 +1.2 1,027,713 - HP15_1014 0.55 -0.3 1,028,057 - -1.2 1,028,134 - -0.4 1,028,134 - +1.1 1,028,173 - -1.2 1,028,198 + HP15_1015 0.10 +1.8 1,028,214 + HP15_1015 0.14 +1.2 1,028,215 - HP15_1015 0.14 -0.9 1,028,303 + HP15_1015 0.34 +1.9 1,028,328 + HP15_1015 0.39 -0.4 1,028,375 + HP15_1015 0.50 +0.4 1,028,547 + HP15_1015 0.89 -0.0 1,028,547 + HP15_1015 0.89 +1.2 1,028,572 + +0.2 1,028,572 + -1.1 1,028,634 - -0.2 1,028,761 - -1.2 1,028,862 - -0.2 1,028,983 + -0.8 1,028,986 - +0.2 1,029,115 + HP15_1016 0.44 +0.7 1,029,179 + HP15_1016 0.67 -1.2 1,029,231 + HP15_1016 0.86 -0.6 1,029,259 - -0.9 1,029,365 + +2.0 1,029,435 + +0.3 1,029,435 + +0.2 1,029,538 + HP15_1017 0.16 -0.2
Or see this region's nucleotide sequence