Experiment: PYE 0.5x 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02296 and CCNA_02297 are separated by 138 nucleotides CCNA_02297 and CCNA_02298 overlap by 59 nucleotides CCNA_02298 and CCNA_02299 are separated by 58 nucleotides
CCNA_02296: CCNA_02296 - diaminopimelate decarboxylase, at 2,442,876 to 2,444,141
_02296
CCNA_02297: CCNA_02297 - hypoxanthine-guanine phosphoribosyltransferase, at 2,444,280 to 2,444,861
_02297
CCNA_02298: CCNA_02298 - MJ0042 family finger-like domain protein, at 2,444,803 to 2,445,762
_02298
CCNA_02299: CCNA_02299 - cell division ATP-binding protein FtsE, at 2,445,821 to 2,446,528
_02299
Position (kb)
2444
2445 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2443.582 kb on + strand, within CCNA_02296 at 2443.715 kb on + strand, within CCNA_02296 at 2444.154 kb on - strand at 2444.202 kb on - strand at 2444.215 kb on + strand at 2444.223 kb on - strand at 2444.304 kb on - strand at 2444.387 kb on - strand, within CCNA_02297 at 2444.448 kb on - strand, within CCNA_02297 at 2444.481 kb on - strand, within CCNA_02297 at 2444.509 kb on + strand, within CCNA_02297 at 2444.578 kb on - strand, within CCNA_02297 at 2444.606 kb on + strand, within CCNA_02297 at 2444.640 kb on - strand, within CCNA_02297 at 2444.646 kb on - strand, within CCNA_02297 at 2444.650 kb on + strand, within CCNA_02297 at 2444.655 kb on + strand, within CCNA_02297 at 2444.661 kb on - strand, within CCNA_02297 at 2444.691 kb on - strand, within CCNA_02297 at 2444.697 kb on + strand, within CCNA_02297 at 2444.705 kb on - strand, within CCNA_02297 at 2444.771 kb on - strand, within CCNA_02297 at 2444.791 kb on + strand, within CCNA_02297 at 2444.837 kb on - strand at 2444.865 kb on - strand at 2444.871 kb on + strand at 2444.895 kb on + strand at 2444.954 kb on + strand, within CCNA_02298 at 2444.971 kb on + strand, within CCNA_02298 at 2445.119 kb on - strand, within CCNA_02298 at 2445.132 kb on - strand, within CCNA_02298 at 2445.147 kb on - strand, within CCNA_02298 at 2445.178 kb on - strand, within CCNA_02298 at 2445.195 kb on - strand, within CCNA_02298 at 2445.195 kb on - strand, within CCNA_02298 at 2445.200 kb on - strand, within CCNA_02298 at 2445.226 kb on + strand, within CCNA_02298 at 2445.238 kb on + strand, within CCNA_02298 at 2445.245 kb on + strand, within CCNA_02298 at 2445.245 kb on + strand, within CCNA_02298 at 2445.246 kb on - strand, within CCNA_02298 at 2445.273 kb on + strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.281 kb on - strand, within CCNA_02298 at 2445.339 kb on + strand, within CCNA_02298 at 2445.355 kb on + strand, within CCNA_02298 at 2445.363 kb on - strand, within CCNA_02298 at 2445.408 kb on - strand, within CCNA_02298 at 2445.508 kb on + strand, within CCNA_02298 at 2445.595 kb on - strand, within CCNA_02298 at 2445.607 kb on + strand, within CCNA_02298 at 2445.614 kb on - strand, within CCNA_02298 at 2445.615 kb on - strand, within CCNA_02298 at 2445.691 kb on - strand at 2445.717 kb on + strand at 2445.735 kb on - strand at 2445.831 kb on + strand at 2445.836 kb on + strand at 2445.841 kb on + strand at 2445.844 kb on - strand at 2445.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 30C remove 2,443,582 + CCNA_02296 0.56 -0.1 2,443,715 + CCNA_02296 0.66 +0.9 2,444,154 - -0.3 2,444,202 - +0.2 2,444,215 + -0.7 2,444,223 - -0.1 2,444,304 - -0.6 2,444,387 - CCNA_02297 0.18 +0.1 2,444,448 - CCNA_02297 0.29 -0.3 2,444,481 - CCNA_02297 0.35 +0.3 2,444,509 + CCNA_02297 0.39 -1.8 2,444,578 - CCNA_02297 0.51 -0.0 2,444,606 + CCNA_02297 0.56 -0.7 2,444,640 - CCNA_02297 0.62 +0.9 2,444,646 - CCNA_02297 0.63 -0.4 2,444,650 + CCNA_02297 0.64 +1.9 2,444,655 + CCNA_02297 0.64 +0.1 2,444,661 - CCNA_02297 0.65 -0.6 2,444,691 - CCNA_02297 0.71 -0.2 2,444,697 + CCNA_02297 0.72 -2.4 2,444,705 - CCNA_02297 0.73 +0.0 2,444,771 - CCNA_02297 0.84 -0.5 2,444,791 + CCNA_02297 0.88 +0.5 2,444,837 - -0.1 2,444,865 - +0.3 2,444,871 + +1.9 2,444,895 + -1.3 2,444,954 + CCNA_02298 0.16 -0.4 2,444,971 + CCNA_02298 0.17 +0.0 2,445,119 - CCNA_02298 0.33 -0.2 2,445,132 - CCNA_02298 0.34 +1.0 2,445,147 - CCNA_02298 0.36 -0.2 2,445,178 - CCNA_02298 0.39 +0.0 2,445,195 - CCNA_02298 0.41 +0.3 2,445,195 - CCNA_02298 0.41 -0.1 2,445,200 - CCNA_02298 0.41 +0.1 2,445,226 + CCNA_02298 0.44 +0.1 2,445,238 + CCNA_02298 0.45 +0.0 2,445,245 + CCNA_02298 0.46 +1.0 2,445,245 + CCNA_02298 0.46 -1.7 2,445,246 - CCNA_02298 0.46 +0.7 2,445,273 + CCNA_02298 0.49 +0.1 2,445,281 - CCNA_02298 0.50 -0.8 2,445,281 - CCNA_02298 0.50 +0.5 2,445,281 - CCNA_02298 0.50 -0.0 2,445,281 - CCNA_02298 0.50 +0.3 2,445,281 - CCNA_02298 0.50 +0.3 2,445,339 + CCNA_02298 0.56 -0.3 2,445,355 + CCNA_02298 0.57 +1.9 2,445,363 - CCNA_02298 0.58 -1.7 2,445,408 - CCNA_02298 0.63 +0.1 2,445,508 + CCNA_02298 0.73 +0.7 2,445,595 - CCNA_02298 0.82 +0.4 2,445,607 + CCNA_02298 0.84 -0.5 2,445,614 - CCNA_02298 0.84 +0.4 2,445,615 - CCNA_02298 0.85 +0.6 2,445,691 - -0.0 2,445,717 + +0.5 2,445,735 - +0.3 2,445,831 + +0.3 2,445,836 + -0.5 2,445,841 + -0.7 2,445,844 - -1.0 2,445,844 - +0.3
Or see this region's nucleotide sequence