Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13900

Experiment: reconstituted MRS with Bimuno-prebiotic 0.5 %w/v

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13895 and BBR_RS13900 overlap by 11 nucleotidesBBR_RS13900 and BBR_RS13905 are separated by 28 nucleotidesBBR_RS13905 and BBR_RS13910 overlap by 4 nucleotides BBR_RS13895: BBR_RS13895 - acetylglutamate kinase, at 897,400 to 898,356 _RS13895 BBR_RS13900: BBR_RS13900 - acetylornithine transaminase, at 898,346 to 899,641 _RS13900 BBR_RS13905: BBR_RS13905 - ornithine carbamoyltransferase, at 899,670 to 900,635 _RS13905 BBR_RS13910: BBR_RS13910 - arginine repressor, at 900,632 to 901,144 _RS13910 Position (kb) 898 899 900Strain fitness (log2 ratio) -2 -1 0 1 2at 897.352 kb on + strandat 897.360 kb on - strandat 897.409 kb on + strandat 897.475 kb on - strandat 897.492 kb on + strandat 897.514 kb on + strand, within BBR_RS13895at 897.585 kb on + strand, within BBR_RS13895at 897.667 kb on + strand, within BBR_RS13895at 897.668 kb on - strand, within BBR_RS13895at 897.697 kb on + strand, within BBR_RS13895at 897.742 kb on + strand, within BBR_RS13895at 897.775 kb on + strand, within BBR_RS13895at 897.834 kb on + strand, within BBR_RS13895at 897.880 kb on + strand, within BBR_RS13895at 897.918 kb on - strand, within BBR_RS13895at 897.984 kb on + strand, within BBR_RS13895at 898.000 kb on - strand, within BBR_RS13895at 898.130 kb on + strand, within BBR_RS13895at 898.225 kb on - strand, within BBR_RS13895at 898.250 kb on + strand, within BBR_RS13895at 898.278 kb on + strandat 898.330 kb on + strandat 898.340 kb on + strandat 898.350 kb on + strandat 898.407 kb on + strandat 898.407 kb on + strandat 898.534 kb on + strand, within BBR_RS13900at 898.555 kb on + strand, within BBR_RS13900at 898.589 kb on + strand, within BBR_RS13900at 898.671 kb on + strand, within BBR_RS13900at 898.735 kb on + strand, within BBR_RS13900at 898.758 kb on + strand, within BBR_RS13900at 898.758 kb on + strand, within BBR_RS13900at 898.763 kb on + strand, within BBR_RS13900at 898.788 kb on + strand, within BBR_RS13900at 898.871 kb on + strand, within BBR_RS13900at 898.871 kb on + strand, within BBR_RS13900at 898.925 kb on + strand, within BBR_RS13900at 898.938 kb on - strand, within BBR_RS13900at 898.938 kb on - strand, within BBR_RS13900at 899.010 kb on - strand, within BBR_RS13900at 899.044 kb on + strand, within BBR_RS13900at 899.102 kb on + strand, within BBR_RS13900at 899.102 kb on + strand, within BBR_RS13900at 899.178 kb on + strand, within BBR_RS13900at 899.180 kb on + strand, within BBR_RS13900at 899.180 kb on + strand, within BBR_RS13900at 899.255 kb on + strand, within BBR_RS13900at 899.255 kb on + strand, within BBR_RS13900at 899.279 kb on + strand, within BBR_RS13900at 899.287 kb on - strand, within BBR_RS13900at 899.417 kb on + strand, within BBR_RS13900at 899.424 kb on + strand, within BBR_RS13900at 899.424 kb on + strand, within BBR_RS13900at 899.430 kb on - strand, within BBR_RS13900at 899.430 kb on - strand, within BBR_RS13900at 899.439 kb on + strand, within BBR_RS13900at 899.439 kb on + strand, within BBR_RS13900at 899.449 kb on + strand, within BBR_RS13900at 899.457 kb on + strand, within BBR_RS13900at 899.474 kb on + strand, within BBR_RS13900at 899.489 kb on + strand, within BBR_RS13900at 899.489 kb on + strand, within BBR_RS13900at 899.505 kb on - strand, within BBR_RS13900at 899.535 kb on + strandat 899.550 kb on + strandat 899.672 kb on + strandat 899.674 kb on + strandat 899.674 kb on + strandat 899.674 kb on + strandat 899.674 kb on + strandat 899.748 kb on + strandat 899.925 kb on + strand, within BBR_RS13905at 899.930 kb on + strand, within BBR_RS13905at 899.934 kb on + strand, within BBR_RS13905at 899.934 kb on + strand, within BBR_RS13905at 900.017 kb on + strand, within BBR_RS13905at 900.073 kb on + strand, within BBR_RS13905at 900.089 kb on + strand, within BBR_RS13905at 900.145 kb on + strand, within BBR_RS13905at 900.248 kb on + strand, within BBR_RS13905at 900.298 kb on + strand, within BBR_RS13905at 900.310 kb on + strand, within BBR_RS13905at 900.310 kb on + strand, within BBR_RS13905at 900.410 kb on + strand, within BBR_RS13905at 900.418 kb on - strand, within BBR_RS13905at 900.425 kb on + strand, within BBR_RS13905at 900.425 kb on + strand, within BBR_RS13905at 900.539 kb on + strandat 900.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction reconstituted MRS with Bimuno-prebiotic 0.5 %w/v
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897,352 + +0.8
897,360 - -0.9
897,409 + -0.0
897,475 - -2.0
897,492 + -0.2
897,514 + BBR_RS13895 0.12 +0.1
897,585 + BBR_RS13895 0.19 +0.7
897,667 + BBR_RS13895 0.28 +1.0
897,668 - BBR_RS13895 0.28 +0.9
897,697 + BBR_RS13895 0.31 +0.4
897,742 + BBR_RS13895 0.36 +0.5
897,775 + BBR_RS13895 0.39 -1.0
897,834 + BBR_RS13895 0.45 +0.2
897,880 + BBR_RS13895 0.50 -0.8
897,918 - BBR_RS13895 0.54 -0.1
897,984 + BBR_RS13895 0.61 +0.8
898,000 - BBR_RS13895 0.63 +1.5
898,130 + BBR_RS13895 0.76 +0.2
898,225 - BBR_RS13895 0.86 -0.3
898,250 + BBR_RS13895 0.89 -0.5
898,278 + -0.3
898,330 + -1.1
898,340 + +0.2
898,350 + -0.3
898,407 + +0.7
898,407 + -0.1
898,534 + BBR_RS13900 0.15 +1.8
898,555 + BBR_RS13900 0.16 -0.8
898,589 + BBR_RS13900 0.19 -0.2
898,671 + BBR_RS13900 0.25 +0.3
898,735 + BBR_RS13900 0.30 +0.1
898,758 + BBR_RS13900 0.32 +0.6
898,758 + BBR_RS13900 0.32 -0.5
898,763 + BBR_RS13900 0.32 -0.5
898,788 + BBR_RS13900 0.34 +0.2
898,871 + BBR_RS13900 0.41 +0.1
898,871 + BBR_RS13900 0.41 +0.6
898,925 + BBR_RS13900 0.45 -0.5
898,938 - BBR_RS13900 0.46 +0.3
898,938 - BBR_RS13900 0.46 -1.0
899,010 - BBR_RS13900 0.51 +0.1
899,044 + BBR_RS13900 0.54 -0.2
899,102 + BBR_RS13900 0.58 +0.2
899,102 + BBR_RS13900 0.58 -2.2
899,178 + BBR_RS13900 0.64 +0.4
899,180 + BBR_RS13900 0.64 -0.2
899,180 + BBR_RS13900 0.64 -0.0
899,255 + BBR_RS13900 0.70 -0.5
899,255 + BBR_RS13900 0.70 -0.3
899,279 + BBR_RS13900 0.72 +0.5
899,287 - BBR_RS13900 0.73 -1.2
899,417 + BBR_RS13900 0.83 +0.1
899,424 + BBR_RS13900 0.83 -0.5
899,424 + BBR_RS13900 0.83 -0.4
899,430 - BBR_RS13900 0.84 +0.5
899,430 - BBR_RS13900 0.84 -0.4
899,439 + BBR_RS13900 0.84 -0.0
899,439 + BBR_RS13900 0.84 +0.0
899,449 + BBR_RS13900 0.85 -0.2
899,457 + BBR_RS13900 0.86 +1.4
899,474 + BBR_RS13900 0.87 +0.3
899,489 + BBR_RS13900 0.88 +0.1
899,489 + BBR_RS13900 0.88 -1.3
899,505 - BBR_RS13900 0.89 +0.4
899,535 + +0.0
899,550 + +0.1
899,672 + +0.5
899,674 + -0.5
899,674 + +0.5
899,674 + -0.4
899,674 + +0.5
899,748 + -0.5
899,925 + BBR_RS13905 0.26 +0.5
899,930 + BBR_RS13905 0.27 +0.0
899,934 + BBR_RS13905 0.27 -0.2
899,934 + BBR_RS13905 0.27 -0.1
900,017 + BBR_RS13905 0.36 +0.1
900,073 + BBR_RS13905 0.42 +0.6
900,089 + BBR_RS13905 0.43 -0.1
900,145 + BBR_RS13905 0.49 -1.5
900,248 + BBR_RS13905 0.60 -0.7
900,298 + BBR_RS13905 0.65 +0.2
900,310 + BBR_RS13905 0.66 -0.7
900,310 + BBR_RS13905 0.66 -0.7
900,410 + BBR_RS13905 0.77 +0.1
900,418 - BBR_RS13905 0.77 +1.5
900,425 + BBR_RS13905 0.78 +0.3
900,425 + BBR_RS13905 0.78 -0.1
900,539 + -0.0
900,540 + +0.2

Or see this region's nucleotide sequence