Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05982 and H281DRAFT_05983 are separated by 46 nucleotides H281DRAFT_05983 and H281DRAFT_05984 are separated by 145 nucleotides H281DRAFT_05984 and H281DRAFT_05985 are separated by 45 nucleotides
H281DRAFT_05982: H281DRAFT_05982 - Predicted arabinose efflux permease, MFS family, at 124,841 to 126,259
_05982
H281DRAFT_05983: H281DRAFT_05983 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 126,306 to 127,058
_05983
H281DRAFT_05984: H281DRAFT_05984 - conserved hypothetical protein, at 127,204 to 127,506
_05984
H281DRAFT_05985: H281DRAFT_05985 - Predicted integral membrane protein, at 127,552 to 128,256
_05985
Position (kb) 126
127
128 Strain fitness (log2 ratio) -1
0
1 at 125.386 kb on - strand, within H281DRAFT_05982 at 125.618 kb on + strand, within H281DRAFT_05982 at 125.756 kb on + strand, within H281DRAFT_05982 at 125.852 kb on + strand, within H281DRAFT_05982 at 125.852 kb on + strand, within H281DRAFT_05982 at 125.853 kb on - strand, within H281DRAFT_05982 at 125.867 kb on - strand, within H281DRAFT_05982 at 125.868 kb on + strand, within H281DRAFT_05982 at 126.031 kb on - strand, within H281DRAFT_05982 at 126.106 kb on - strand, within H281DRAFT_05982 at 126.130 kb on - strand at 126.426 kb on + strand, within H281DRAFT_05983 at 126.772 kb on + strand, within H281DRAFT_05983 at 127.011 kb on + strand at 127.012 kb on - strand at 127.204 kb on - strand at 127.265 kb on - strand, within H281DRAFT_05984 at 127.310 kb on - strand, within H281DRAFT_05984 at 127.342 kb on + strand, within H281DRAFT_05984 at 127.549 kb on + strand at 127.550 kb on - strand at 127.553 kb on + strand at 127.553 kb on + strand at 127.793 kb on + strand, within H281DRAFT_05985 at 127.794 kb on - strand, within H281DRAFT_05985 at 127.794 kb on - strand, within H281DRAFT_05985 at 127.794 kb on - strand, within H281DRAFT_05985 at 128.027 kb on + strand, within H281DRAFT_05985
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 125,386 - H281DRAFT_05982 0.38 -0.1 125,618 + H281DRAFT_05982 0.55 -0.2 125,756 + H281DRAFT_05982 0.64 +0.8 125,852 + H281DRAFT_05982 0.71 -0.2 125,852 + H281DRAFT_05982 0.71 +0.4 125,853 - H281DRAFT_05982 0.71 -0.9 125,867 - H281DRAFT_05982 0.72 -0.6 125,868 + H281DRAFT_05982 0.72 +0.8 126,031 - H281DRAFT_05982 0.84 -0.3 126,106 - H281DRAFT_05982 0.89 -0.6 126,130 - -0.2 126,426 + H281DRAFT_05983 0.16 +0.6 126,772 + H281DRAFT_05983 0.62 +0.8 127,011 + +0.1 127,012 - -0.2 127,204 - +0.2 127,265 - H281DRAFT_05984 0.20 -0.6 127,310 - H281DRAFT_05984 0.35 -0.2 127,342 + H281DRAFT_05984 0.46 +0.3 127,549 + +0.4 127,550 - -0.2 127,553 + +0.5 127,553 + -0.2 127,793 + H281DRAFT_05985 0.34 -0.6 127,794 - H281DRAFT_05985 0.34 +0.3 127,794 - H281DRAFT_05985 0.34 +1.0 127,794 - H281DRAFT_05985 0.34 -0.2 128,027 + H281DRAFT_05985 0.67 +1.0
Or see this region's nucleotide sequence