Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05882

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05881 and H281DRAFT_05882 are separated by 93 nucleotidesH281DRAFT_05882 and H281DRAFT_05883 are separated by 236 nucleotides H281DRAFT_05881: H281DRAFT_05881 - D-amino-acid dehydrogenase, at 19,314 to 20,558 _05881 H281DRAFT_05882: H281DRAFT_05882 - amino acid ABC transporter substrate-binding protein, PAAT family, at 20,652 to 21,440 _05882 H281DRAFT_05883: H281DRAFT_05883 - ornithine cyclodeaminase (EC 4.3.1.12), at 21,677 to 22,648 _05883 Position (kb) 20 21 22Strain fitness (log2 ratio) -1 0 1at 20.134 kb on + strandat 20.153 kb on + strand, within H281DRAFT_05881at 20.502 kb on + strandat 20.930 kb on - strand, within H281DRAFT_05882at 21.102 kb on + strand, within H281DRAFT_05882at 21.103 kb on - strand, within H281DRAFT_05882at 21.797 kb on - strand, within H281DRAFT_05883at 22.285 kb on + strand, within H281DRAFT_05883at 22.285 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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20,134 + -0.4
20,153 + H281DRAFT_05881 0.67 +0.3
20,502 + +0.3
20,930 - H281DRAFT_05882 0.35 +0.5
21,102 + H281DRAFT_05882 0.57 +0.3
21,103 - H281DRAFT_05882 0.57 +0.6
21,797 - H281DRAFT_05883 0.12 +0.5
22,285 + H281DRAFT_05883 0.63 +0.1
22,285 + +0.9

Or see this region's nucleotide sequence