Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05740 and H281DRAFT_05741 are separated by 84 nucleotides H281DRAFT_05741 and H281DRAFT_05742 are separated by 87 nucleotides H281DRAFT_05742 and H281DRAFT_05743 are separated by 63 nucleotides H281DRAFT_05743 and H281DRAFT_05744 are separated by 42 nucleotides
H281DRAFT_05740: H281DRAFT_05740 - chemotaxis protein MotB, at 12,225 to 13,232
_05740
H281DRAFT_05741: H281DRAFT_05741 - two-component system, chemotaxis family, response regulator CheY, at 13,317 to 13,694
_05741
H281DRAFT_05742: H281DRAFT_05742 - CheA signal transduction histidine kinase, at 13,782 to 16,058
_05742
H281DRAFT_05743: H281DRAFT_05743 - CheW protein, at 16,122 to 16,652
_05743
H281DRAFT_05744: H281DRAFT_05744 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 16,695 to 18,548
_05744
Position (kb) 13
14
15
16
17 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.795 kb on + strand, within H281DRAFT_05740 at 12.795 kb on + strand, within H281DRAFT_05740 at 12.795 kb on + strand, within H281DRAFT_05740 at 12.796 kb on - strand, within H281DRAFT_05740 at 12.796 kb on - strand, within H281DRAFT_05740 at 12.859 kb on + strand, within H281DRAFT_05740 at 12.860 kb on - strand, within H281DRAFT_05740 at 12.860 kb on - strand, within H281DRAFT_05740 at 12.886 kb on - strand, within H281DRAFT_05740 at 12.906 kb on + strand, within H281DRAFT_05740 at 12.907 kb on - strand, within H281DRAFT_05740 at 12.907 kb on - strand, within H281DRAFT_05740 at 12.988 kb on + strand, within H281DRAFT_05740 at 12.988 kb on + strand, within H281DRAFT_05740 at 12.989 kb on - strand, within H281DRAFT_05740 at 12.997 kb on + strand, within H281DRAFT_05740 at 12.998 kb on - strand, within H281DRAFT_05740 at 13.293 kb on + strand at 13.293 kb on + strand at 13.293 kb on + strand at 13.294 kb on - strand at 13.294 kb on - strand at 13.294 kb on - strand at 13.298 kb on + strand at 13.298 kb on + strand at 13.298 kb on + strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.536 kb on + strand, within H281DRAFT_05741 at 13.693 kb on - strand at 13.693 kb on - strand at 13.693 kb on - strand at 13.705 kb on + strand at 13.705 kb on + strand at 13.705 kb on + strand at 13.706 kb on - strand at 13.714 kb on + strand at 13.716 kb on + strand at 13.716 kb on + strand at 13.717 kb on - strand at 13.806 kb on + strand at 13.806 kb on + strand at 13.806 kb on + strand at 13.807 kb on - strand at 13.807 kb on - strand at 13.958 kb on + strand at 13.958 kb on + strand at 14.248 kb on + strand, within H281DRAFT_05742 at 14.248 kb on + strand, within H281DRAFT_05742 at 14.390 kb on + strand, within H281DRAFT_05742 at 14.391 kb on - strand, within H281DRAFT_05742 at 14.391 kb on - strand, within H281DRAFT_05742 at 14.514 kb on - strand, within H281DRAFT_05742 at 14.514 kb on - strand, within H281DRAFT_05742 at 14.681 kb on + strand, within H281DRAFT_05742 at 14.684 kb on + strand, within H281DRAFT_05742 at 14.685 kb on - strand, within H281DRAFT_05742 at 15.084 kb on + strand, within H281DRAFT_05742 at 15.084 kb on + strand, within H281DRAFT_05742 at 15.085 kb on - strand, within H281DRAFT_05742 at 15.085 kb on - strand, within H281DRAFT_05742 at 15.085 kb on - strand, within H281DRAFT_05742 at 15.720 kb on + strand, within H281DRAFT_05742 at 15.720 kb on + strand, within H281DRAFT_05742 at 15.721 kb on - strand, within H281DRAFT_05742 at 15.721 kb on - strand, within H281DRAFT_05742 at 16.078 kb on - strand at 16.093 kb on + strand at 16.094 kb on - strand at 16.098 kb on + strand at 16.098 kb on + strand at 16.119 kb on - strand at 16.223 kb on + strand, within H281DRAFT_05743 at 16.242 kb on + strand, within H281DRAFT_05743 at 16.545 kb on + strand, within H281DRAFT_05743 at 16.545 kb on + strand, within H281DRAFT_05743 at 16.650 kb on + strand at 16.651 kb on - strand at 16.699 kb on + strand at 16.700 kb on - strand at 16.700 kb on - strand at 16.700 kb on - strand at 16.700 kb on - strand at 16.774 kb on + strand at 16.872 kb on + strand at 16.872 kb on + strand at 16.873 kb on - strand at 16.975 kb on - strand, within H281DRAFT_05744
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 12,795 + H281DRAFT_05740 0.57 -0.3 12,795 + H281DRAFT_05740 0.57 +0.6 12,795 + H281DRAFT_05740 0.57 -0.3 12,796 - H281DRAFT_05740 0.57 +0.3 12,796 - H281DRAFT_05740 0.57 +1.6 12,859 + H281DRAFT_05740 0.63 +0.4 12,860 - H281DRAFT_05740 0.63 -0.5 12,860 - H281DRAFT_05740 0.63 +1.9 12,886 - H281DRAFT_05740 0.66 +1.2 12,906 + H281DRAFT_05740 0.68 +0.0 12,907 - H281DRAFT_05740 0.68 -0.8 12,907 - H281DRAFT_05740 0.68 +0.7 12,988 + H281DRAFT_05740 0.76 -1.2 12,988 + H281DRAFT_05740 0.76 -0.3 12,989 - H281DRAFT_05740 0.76 +0.9 12,997 + H281DRAFT_05740 0.77 +0.4 12,998 - H281DRAFT_05740 0.77 +0.3 13,293 + -0.1 13,293 + +0.4 13,293 + -1.1 13,294 - -0.6 13,294 - -0.7 13,294 - +0.4 13,298 + -0.3 13,298 + +0.3 13,298 + +0.7 13,299 - -0.8 13,299 - -1.6 13,299 - -0.5 13,299 - -0.2 13,299 - +0.4 13,299 - -1.1 13,299 - -0.3 13,536 + H281DRAFT_05741 0.58 +0.4 13,693 - -0.6 13,693 - -0.6 13,693 - +0.7 13,705 + +0.0 13,705 + +0.4 13,705 + -0.6 13,706 - +0.3 13,714 + -0.7 13,716 + +0.0 13,716 + -0.3 13,717 - +0.3 13,806 + -0.5 13,806 + -0.4 13,806 + -0.6 13,807 - -0.3 13,807 - -0.8 13,958 + -0.5 13,958 + -0.5 14,248 + H281DRAFT_05742 0.20 -1.5 14,248 + H281DRAFT_05742 0.20 +0.0 14,390 + H281DRAFT_05742 0.27 -0.6 14,391 - H281DRAFT_05742 0.27 -0.2 14,391 - H281DRAFT_05742 0.27 -0.6 14,514 - H281DRAFT_05742 0.32 -0.3 14,514 - H281DRAFT_05742 0.32 -0.9 14,681 + H281DRAFT_05742 0.39 -0.5 14,684 + H281DRAFT_05742 0.40 -1.2 14,685 - H281DRAFT_05742 0.40 -0.5 15,084 + H281DRAFT_05742 0.57 +0.2 15,084 + H281DRAFT_05742 0.57 -0.1 15,085 - H281DRAFT_05742 0.57 -0.2 15,085 - H281DRAFT_05742 0.57 -0.2 15,085 - H281DRAFT_05742 0.57 -0.1 15,720 + H281DRAFT_05742 0.85 -1.6 15,720 + H281DRAFT_05742 0.85 +0.2 15,721 - H281DRAFT_05742 0.85 -0.3 15,721 - H281DRAFT_05742 0.85 +0.8 16,078 - -0.4 16,093 + -0.0 16,094 - +0.0 16,098 + +0.1 16,098 + +0.3 16,119 - -1.0 16,223 + H281DRAFT_05743 0.19 -0.1 16,242 + H281DRAFT_05743 0.23 +0.7 16,545 + H281DRAFT_05743 0.80 -1.8 16,545 + H281DRAFT_05743 0.80 -1.3 16,650 + -2.2 16,651 - +1.1 16,699 + -0.3 16,700 - -0.9 16,700 - -0.7 16,700 - -0.3 16,700 - -0.6 16,774 + -0.5 16,872 + -1.6 16,872 + +0.8 16,873 - +0.4 16,975 - H281DRAFT_05744 0.15 +0.1
Or see this region's nucleotide sequence