Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05461 and H281DRAFT_05462 are separated by 77 nucleotides H281DRAFT_05462 and H281DRAFT_05463 are separated by 102 nucleotides H281DRAFT_05463 and H281DRAFT_05464 are separated by 177 nucleotides
H281DRAFT_05461: H281DRAFT_05461 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 42,152 to 43,003
_05461
H281DRAFT_05462: H281DRAFT_05462 - hypothetical protein, at 43,081 to 43,347
_05462
H281DRAFT_05463: H281DRAFT_05463 - acetyl esterase, at 43,450 to 44,244
_05463
H281DRAFT_05464: H281DRAFT_05464 - 4-hydroxyacetophenone monooxygenase, at 44,422 to 46,401
_05464
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 42.502 kb on + strand, within H281DRAFT_05461 at 42.503 kb on - strand, within H281DRAFT_05461 at 42.537 kb on + strand, within H281DRAFT_05461 at 42.537 kb on + strand, within H281DRAFT_05461 at 42.538 kb on - strand, within H281DRAFT_05461 at 42.757 kb on - strand, within H281DRAFT_05461 at 42.969 kb on - strand at 43.005 kb on + strand at 43.006 kb on - strand at 43.006 kb on - strand at 43.006 kb on - strand at 43.218 kb on + strand, within H281DRAFT_05462 at 43.260 kb on + strand, within H281DRAFT_05462 at 43.260 kb on + strand, within H281DRAFT_05462 at 43.260 kb on + strand, within H281DRAFT_05462 at 43.260 kb on + strand, within H281DRAFT_05462 at 43.261 kb on - strand, within H281DRAFT_05462 at 43.372 kb on - strand at 43.398 kb on + strand at 43.506 kb on + strand at 43.507 kb on - strand at 43.604 kb on + strand, within H281DRAFT_05463 at 43.605 kb on - strand, within H281DRAFT_05463 at 43.733 kb on + strand, within H281DRAFT_05463 at 43.733 kb on + strand, within H281DRAFT_05463 at 43.733 kb on + strand, within H281DRAFT_05463 at 43.733 kb on + strand, within H281DRAFT_05463 at 43.734 kb on - strand, within H281DRAFT_05463 at 43.734 kb on - strand, within H281DRAFT_05463 at 43.734 kb on - strand, within H281DRAFT_05463 at 43.797 kb on - strand, within H281DRAFT_05463 at 43.965 kb on + strand, within H281DRAFT_05463 at 43.966 kb on - strand, within H281DRAFT_05463 at 43.966 kb on - strand, within H281DRAFT_05463 at 44.144 kb on + strand, within H281DRAFT_05463 at 44.144 kb on + strand, within H281DRAFT_05463 at 44.144 kb on + strand, within H281DRAFT_05463 at 44.145 kb on - strand, within H281DRAFT_05463 at 44.145 kb on - strand at 44.152 kb on + strand, within H281DRAFT_05463 at 44.153 kb on - strand, within H281DRAFT_05463 at 44.380 kb on - strand at 44.380 kb on - strand at 44.380 kb on - strand at 44.384 kb on - strand at 44.384 kb on - strand at 44.384 kb on - strand at 44.391 kb on + strand at 44.392 kb on - strand at 44.529 kb on - strand at 44.618 kb on - strand at 44.720 kb on + strand, within H281DRAFT_05464 at 44.747 kb on + strand, within H281DRAFT_05464 at 44.747 kb on + strand, within H281DRAFT_05464 at 44.747 kb on + strand, within H281DRAFT_05464 at 44.748 kb on - strand, within H281DRAFT_05464 at 44.748 kb on - strand, within H281DRAFT_05464 at 44.748 kb on - strand, within H281DRAFT_05464 at 44.748 kb on - strand, within H281DRAFT_05464 at 44.886 kb on - strand, within H281DRAFT_05464 at 45.239 kb on + strand, within H281DRAFT_05464 at 45.239 kb on + strand, within H281DRAFT_05464 at 45.239 kb on + strand, within H281DRAFT_05464
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 42,502 + H281DRAFT_05461 0.41 +0.9 42,503 - H281DRAFT_05461 0.41 -0.0 42,537 + H281DRAFT_05461 0.45 +0.1 42,537 + H281DRAFT_05461 0.45 +0.5 42,538 - H281DRAFT_05461 0.45 +0.6 42,757 - H281DRAFT_05461 0.71 +0.7 42,969 - -0.4 43,005 + -0.2 43,006 - +0.8 43,006 - +0.0 43,006 - +0.2 43,218 + H281DRAFT_05462 0.51 +0.8 43,260 + H281DRAFT_05462 0.67 +0.6 43,260 + H281DRAFT_05462 0.67 +0.6 43,260 + H281DRAFT_05462 0.67 +0.1 43,260 + H281DRAFT_05462 0.67 +0.6 43,261 - H281DRAFT_05462 0.67 -0.1 43,372 - +1.0 43,398 + -0.0 43,506 + +0.5 43,507 - -0.7 43,604 + H281DRAFT_05463 0.19 -1.0 43,605 - H281DRAFT_05463 0.19 +0.3 43,733 + H281DRAFT_05463 0.36 +1.1 43,733 + H281DRAFT_05463 0.36 -0.5 43,733 + H281DRAFT_05463 0.36 -0.8 43,733 + H281DRAFT_05463 0.36 +0.4 43,734 - H281DRAFT_05463 0.36 -0.2 43,734 - H281DRAFT_05463 0.36 +0.4 43,734 - H281DRAFT_05463 0.36 +0.8 43,797 - H281DRAFT_05463 0.44 +0.9 43,965 + H281DRAFT_05463 0.65 -0.1 43,966 - H281DRAFT_05463 0.65 +0.5 43,966 - H281DRAFT_05463 0.65 +0.3 44,144 + H281DRAFT_05463 0.87 +0.0 44,144 + H281DRAFT_05463 0.87 +0.2 44,144 + H281DRAFT_05463 0.87 -0.2 44,145 - H281DRAFT_05463 0.87 -1.1 44,145 - +0.7 44,152 + H281DRAFT_05463 0.88 -0.3 44,153 - H281DRAFT_05463 0.88 +0.2 44,380 - -0.1 44,380 - +0.2 44,380 - +0.5 44,384 - -0.1 44,384 - -0.5 44,384 - -0.3 44,391 + +0.9 44,392 - -0.7 44,529 - +0.6 44,618 - -0.1 44,720 + H281DRAFT_05464 0.15 -0.0 44,747 + H281DRAFT_05464 0.16 +1.3 44,747 + H281DRAFT_05464 0.16 +0.1 44,747 + H281DRAFT_05464 0.16 -0.7 44,748 - H281DRAFT_05464 0.16 +0.2 44,748 - H281DRAFT_05464 0.16 -2.3 44,748 - H281DRAFT_05464 0.16 +0.6 44,748 - H281DRAFT_05464 0.16 +0.3 44,886 - H281DRAFT_05464 0.23 -0.3 45,239 + H281DRAFT_05464 0.41 +1.9 45,239 + H281DRAFT_05464 0.41 +0.1 45,239 + H281DRAFT_05464 0.41 +0.2
Or see this region's nucleotide sequence