Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05078 and H281DRAFT_05079 are separated by 241 nucleotides H281DRAFT_05079 and H281DRAFT_05080 are separated by 10 nucleotides H281DRAFT_05080 and H281DRAFT_05081 are separated by 99 nucleotides H281DRAFT_05081 and H281DRAFT_05082 are separated by 129 nucleotides
H281DRAFT_05078: H281DRAFT_05078 - hypothetical protein, at 15,534 to 16,181
_05078
H281DRAFT_05079: H281DRAFT_05079 - small conductance mechanosensitive channel, at 16,423 to 19,092
_05079
H281DRAFT_05080: H281DRAFT_05080 - Predicted metal-dependent enzyme of the double-stranded beta helix superfamily, at 19,103 to 19,546
_05080
H281DRAFT_05081: H281DRAFT_05081 - hypothetical protein, at 19,646 to 19,741
_05081
H281DRAFT_05082: H281DRAFT_05082 - transcriptional regulator, AsnC family, at 19,871 to 20,338
_05082
Position (kb) 16
17
18
19
20 Strain fitness (log2 ratio) -1
0
1 at 15.485 kb on + strand at 15.924 kb on + strand, within H281DRAFT_05078 at 15.926 kb on + strand, within H281DRAFT_05078 at 15.927 kb on - strand, within H281DRAFT_05078 at 16.110 kb on + strand, within H281DRAFT_05078 at 16.200 kb on + strand at 16.200 kb on + strand at 16.343 kb on + strand at 16.389 kb on + strand at 16.389 kb on + strand at 16.389 kb on + strand at 17.141 kb on - strand at 17.141 kb on - strand, within H281DRAFT_05079 at 17.652 kb on + strand, within H281DRAFT_05079 at 17.881 kb on + strand, within H281DRAFT_05079 at 19.105 kb on - strand at 19.130 kb on + strand at 19.131 kb on - strand at 19.131 kb on - strand at 19.173 kb on + strand, within H281DRAFT_05080 at 19.429 kb on - strand, within H281DRAFT_05080 at 19.467 kb on + strand, within H281DRAFT_05080 at 19.781 kb on - strand at 19.812 kb on - strand at 19.813 kb on + strand at 20.064 kb on + strand, within H281DRAFT_05082 at 20.064 kb on + strand, within H281DRAFT_05082 at 20.065 kb on - strand, within H281DRAFT_05082 at 20.065 kb on - strand, within H281DRAFT_05082
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 15,485 + +0.0 15,924 + H281DRAFT_05078 0.60 +0.6 15,926 + H281DRAFT_05078 0.60 -0.3 15,927 - H281DRAFT_05078 0.61 +1.4 16,110 + H281DRAFT_05078 0.89 +0.1 16,200 + -0.3 16,200 + -0.7 16,343 + -1.1 16,389 + +0.2 16,389 + -0.5 16,389 + -0.2 17,141 - +0.7 17,141 - H281DRAFT_05079 0.27 +0.2 17,652 + H281DRAFT_05079 0.46 +0.2 17,881 + H281DRAFT_05079 0.55 +0.0 19,105 - -0.1 19,130 + +0.2 19,131 - -0.9 19,131 - -0.3 19,173 + H281DRAFT_05080 0.16 -1.3 19,429 - H281DRAFT_05080 0.73 +0.3 19,467 + H281DRAFT_05080 0.82 +0.0 19,781 - +0.2 19,812 - +0.1 19,813 + +0.5 20,064 + H281DRAFT_05082 0.41 +0.1 20,064 + H281DRAFT_05082 0.41 -0.6 20,065 - H281DRAFT_05082 0.41 +0.3 20,065 - H281DRAFT_05082 0.41 +1.0
Or see this region's nucleotide sequence